Browse Element(s) Details


Os.10798.1.S1_at

Description gb:AK100780.1
DB_XREF= gi:32985989
TID=Os.10798.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120G02, full insert sequence.
FL= gb:AK100780.1 gb:AK060798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1601011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15950Os.14701.1.S1_a_at11/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950Os.57467.1.A1_x_at5/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960Os.12244.1.S1_at11/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.57467.1.S1_x_at5/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.37773.1.S1_x_at2/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000Os.34102.1.S1_a_at10/113+8798197..8803386Variant SH3 domain containing protein, expressed
LOC_Os03g16010Os.10798.1.S1_at11/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16010Os.26733.3.S1_x_at3/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16020Os.22731.1.S1_at11/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.57467.1.S1_x_at6/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.37773.1.S1_x_at4/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_x_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.57467.1.S1_x_at5/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.22730.1.S1_at11/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.37773.1.S1_x_at2/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.57467.1.S1_x_at1/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16050Os.11756.1.S1_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16050Os.11756.1.S1_s_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16060Os.49668.1.S1_at11/113+8830385..8833479lipase, putative, expressed
LOC_Os03g16070Os.9617.1.S1_at6/113+8833684..8838058expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10798.1.S1_at--335--6231Chr03:8812076..8812096 (21 bp)
GATGGTTGAATTTCCTGGTCGGTGA
LOC_Os03g16010
Os.10798.1.S1_at--368--9091Chr03:8812157..8812181 (25 bp)
TGCTCTACTTTCTCTTGCTAAACAA
LOC_Os03g16010
Os.10798.1.S1_at--850--2811Chr03:8812187..8812211 (25 bp)
AAGTTCTTTGCCAGAGGAGCGGCCT
LOC_Os03g16010
Os.10798.1.S1_at--1091--4691Chr03:8812205..8812229 (25 bp)
GCGGCCTACAATGCACAGGGTGGTA
LOC_Os03g16010
Os.10798.1.S1_at--353--7991Chr03:8812244..8812268 (25 bp)
GGATGTAATTACACCATGCCCCAGT
LOC_Os03g16010
Os.10798.1.S1_at--119--611Chr03:8812259..8812283 (25 bp)
ATGCCCCAGTGATTTCTACGATTCA
LOC_Os03g16010
Os.10798.1.S1_at--812--5191Chr03:8812284..8812308 (25 bp)
GAATAGGCTTCGACTTACGGCTGCT
LOC_Os03g16010
Os.10798.1.S1_at--554--9931Chr03:8812299..8812323 (25 bp)
TACGGCTGCTCTTGAAAACGCCACA
LOC_Os03g16010
Os.10798.1.S1_at--141--6811Chr03:8812333..8812357 (25 bp)
GTTTTCCTGTGGAGGCACATTCCAT
LOC_Os03g16010
Os.10798.1.S1_at--303--8331Chr03:8812399..8812423 (25 bp)
GGCTCCAATCGGCTAGCTCAATGGG
LOC_Os03g16010
Os.10798.1.S1_at--809--5251Chr03:8812580..8812604 (25 bp)
GAATCTCCATGAGCTGCTGCTAGAT
LOC_Os03g16010
Target Sequence 
GATGGTTGAATTTCCTGGTCGGTGAGAATCGGGAGAGGGAAATTGTCGATCCATATTGTGAGGGAGTGCAGATTGAGACC
TTGGATGCTCTACTTTCTCTTGCTAAACAATGTGTAAGTTCTTTGCCAGAGGAGCGGCCTACAATGCACAGGGTGGTACA
GATGTTGGAGTCGGATGTAATTACACCATGCCCCAGTGATTTCTACGATTCAGAATAGGCTTCGACTTACGGCTGCTCTT
GAAAACGCCACACTGCCGCTGGTTTTCCTGTGGAGGCACATTCCATTTATTCTTTGCAGATTATGTAAATTCATTCCTGC
GGTGTTCGGCTCCAATCGGCTAGCTCAATGGGGAGGACATTTTTGTGTCTATGTATCTATGCTACGTACAAATTATTACT
ACTACATGTCAAGTTAATAAGAAACTTACCAGGAGATTACTGTACTTGTATTGAACTGTCAATCTCGGAAGAATGGAAAT
GGTAGGGATTAGGGATGCCNAGTTTCCTGAATCTCCATGAGCTGCTGCTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis