Browse Element(s) Details

OsAffx.10071.1.S1_at

Description

gb:NM_187466.1
DB_XREF= gi:34902017
GEN=OJ1364E02.7
TID=OsAffx.10071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OJ1364E02.7), mRNA.
PROD=unknown protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g15970	11/11	transposon protein, putative, Mariner sub-class
LOC_Os04g46210	7/11	transposon protein, putative, Mariner sub-class
LOC_Os12g09330	5/11	transposon protein, putative, Mariner sub-class

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g15900	Os.12159.1.S1_s_at	11/11	3	+	8755236..8765107	SH3 domain containing protein, expressed
LOC_Os03g15900	Os.12159.1.S1_at	11/11	3	+	8755236..8765107	SH3 domain containing protein, expressed
LOC_Os03g15910	Os.37394.1.S1_at	3/11	3	+	8767687..8768082	hypothetical protein
LOC_Os03g15920	Os.10388.1.S1_at	11/11	3	+	8767701..8769431	expressed protein
LOC_Os03g15930	Os.15901.1.S1_at	11/11	3	+	8769800..8774784	OTU-like cysteine protease family protein, expressed
LOC_Os03g15930	Os.15901.2.S1_x_at	9/11	3	+	8769800..8774784	OTU-like cysteine protease family protein, expressed
LOC_Os03g15930	Os.15901.2.S1_at	8/11	3	+	8769800..8774784	OTU-like cysteine protease family protein, expressed
LOC_Os03g15940	Os.8225.1.S1_at	11/11	3	+	8776940..8778881	Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950	Os.14701.1.S1_a_at	11/11	3	+	8779850..8785587	Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950	Os.57467.1.A1_x_at	5/11	3	+	8779850..8785587	Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960	Os.12244.1.S1_at	11/11	3	+	8784620..8785609	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960	Os.57467.1.S1_x_at	5/11	3	+	8784620..8785609	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960	Os.37773.1.S1_x_at	2/11	3	+	8784620..8785609	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970	OsAffx.10071.1.S1_at	11/11	3	+	8786381..8788265	transposon protein, putative, Mariner sub-class
LOC_Os03g15980	OsAffx.31659.1.S1_s_at	11/11	3	+	8788487..8788932	hypothetical protein
LOC_Os03g15980	OsAffx.31659.2.S1_at	8/11	3	+	8788487..8788932	hypothetical protein
LOC_Os03g15990	OsAffx.25104.1.S1_at	11/11	3	+	8794075..8796397	hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000	Os.34102.1.S1_a_at	10/11	3	+	8798197..8803386	Variant SH3 domain containing protein, expressed
LOC_Os03g16010	Os.10798.1.S1_at	11/11	3	+	8806805..8812628	protein kinase, putative, expressed
LOC_Os03g16010	Os.26733.3.S1_x_at	3/11	3	+	8806805..8812628	protein kinase, putative, expressed
LOC_Os03g16020	Os.22731.1.S1_at	11/11	3	+	8812766..8813529	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020	Os.57467.1.S1_x_at	6/11	3	+	8812766..8813529	17.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020	Os.37773.1.S1_x_at	4/11	3	+	8812766..8813529	17.4 kDa class I heat shock protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.10071.1.S1_at--125--1051	3	Chr12:4895753..4895777 (25 bp)	TTCACTTACTGGGAGGCAGCCAAGA	LOC_Os12g09330
OsAffx.10071.1.S1_at--1084--507	2	Chr03:8787603..8787627 (25 bp)	GCAGCCAAGAGGAGTAGTCGCAGTA	LOC_Os03g15970
OsAffx.10071.1.S1_at--993--295	2	Chr12:4895885..4895909 (25 bp)	AAGGCCATGACATCTGTCACGAGGG	LOC_Os12g09330
OsAffx.10071.1.S1_at--432--813	2	Chr03:8787752..8787776 (25 bp)	GGACATTATCCGGAACTATCTCATT	LOC_Os03g15970
OsAffx.10071.1.S1_at--785--359	2	Chr12:4895929..4895953 (25 bp)	CATTGAAAAGGTTTTGCCGGCCATC	LOC_Os12g09330
OsAffx.10071.1.S1_at--413--813	2	Chr03:8787825..8787849 (25 bp)	GGACTTCCAATATTCATCCAACAAG	LOC_Os03g15970
OsAffx.10071.1.S1_at--760--581	2	Chr12:4896016..4896040 (25 bp)	GACCCATATTGCAGTTGATGATCCT	LOC_Os12g09330
OsAffx.10071.1.S1_at--1122--771	3	Chr12:4896068..4896092 (25 bp)	GGGTGGGATATACGACTTACATGTC	LOC_Os12g09330
OsAffx.10071.1.S1_at--396--435	2	Chr03:8787939..8787963 (25 bp)	CCACCAAACTCTCCAGATCTTAATG	LOC_Os03g15970
OsAffx.10071.1.S1_at--518--741	3	Chr12:4896248..4896550 (25 bp)	GTGTTTCTTACTCTACAAGGGTGCA	NONE
OsAffx.10071.1.S1_at--1147--531	1	Chr03:8788140..8788164 (25 bp)	GAAGGGCAGCACTATGCAATCCCGC	LOC_Os03g15970

Target Sequence

TTCACTTACTGGGAGGCAGCCAAGAGGAGTAGTCGCAGTAGGGAGAGGGGAACCATGGAGCTCAAGGCCATGACATCTGT
CACGAGGGACATTATCCGGAACTATCTCATTGAAAAGGTTTTGCCGGCCATCAAACATAAATGGCCTAATGAGGAACGAG
GACTTCCAATATTCATCCAACAAGACAATGCAAAGACCCATATTGCAGTTGATGATCCTGCATTTTTAAGTGTTGCACAA
GAAGATGGGTGGGATATACGACTTACATGTCAACCACCAAACTCTCCAGATCTTAATGTTTTGGATTTAGGTTTTTTTGC
AGCATTGCAGTCATTGTTTCAGAAGTCATCTCCATCAAACATCGAAGAAATTGAGACAAATGTGATCAAAGCATATGAAG
AATATCCGGCGAATAGATCGAATCATGTGTTTCTTACTCTACAAGGGTGCATGAGAGAGATTATGCTTGCAAAAGAAGGG
CAGCACTATGCAATCCCGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis