Browse Element(s) Details


Os.15901.2.S1_x_at

Description gb:NM_187462.1
DB_XREF= gi:34902009
GEN=OJ1012B02.19
TID=Os.15901.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15901 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OJ1012B02.19), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g159309/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15940Os.8225.1.S1_at11/113+8776940..8778881Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950Os.14701.1.S1_a_at11/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950Os.57467.1.A1_x_at5/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960Os.12244.1.S1_at11/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.57467.1.S1_x_at5/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.37773.1.S1_x_at2/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000Os.34102.1.S1_a_at10/113+8798197..8803386Variant SH3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15901.2.S1_x_at--446--3751Chr03:8770095..8770119 (25 bp)
CTCAGCTGCTTTTCTAGGGTTGCTA
LOC_Os03g15930
Os.15901.2.S1_x_at--455--471Chr03:8771811..8771835 (25 bp)
ATCTGCGATGATGAGACTGAACGAC
LOC_Os03g15930
Os.15901.2.S1_x_at--1136--6311Chr03:8771871..8771970 (25 bp)
GATGAATCATTGAGGCGCTACTGCC
LOC_Os03g15930
Os.15901.2.S1_x_at--569--6091NONE
GAGTCAGAACTCTTGGTTTTGTCTA
NONE
Os.15901.2.S1_x_at--244--10251Chr03:8773324..8773348 (25 bp)
TTTGTCTAAATTGTGTCGGCAGCCA
LOC_Os03g15930
Os.15901.2.S1_x_at--876--7451Chr03:8773336..8773360 (25 bp)
GTGTCGGCAGCCAATCATTATTTAT
LOC_Os03g15930
Os.15901.2.S1_x_at--1110--10371NONE
TTATATTCCAGAGCGTGAGTACCAT
NONE
Os.15901.2.S1_x_at--754--2971Chr03:8774183..8774207 (25 bp)
AATGGTTTTATTCCTATAGCAGAGT
LOC_Os03g15930
Os.15901.2.S1_x_at--736--5731Chr03:8774211..8774235 (25 bp)
GACTGGAATTCTCCAAGGACTCAAA
LOC_Os03g15930
Os.15901.2.S1_x_at--754--2311Chr03:8774248..8774421 (25 bp)
AAAGGTGCCATTTTTTGCTTGCGTC
LOC_Os03g15930
Os.15901.2.S1_x_at--961--10391Chr03:8774409..8774433 (25 bp)
TTTTGCTTGCGTCTCTGCAGACAGC
LOC_Os03g15930
Target Sequence 
CTCAGCTGCTTTTCTAGGGTTGCTACCTCCCTGAGGGGCGGGTGGTCGGGGGCGCTGAACAAGGTGGAGCACTACGGGGT
CCAGAGGGTCACGGGTGATGGCCGGTGCATGTTTCGGGCGTTGGTGAAAGGAATGGCAAAGAACAAGGGGATTCCATTGA
CCTCAAGGGAGGAGGTACAAGATGCAGATGATTTACGGATGGCAGTAAAAGAAGTTATCTGCGATGATGAGACTGAACGA
CAAAAATATGAAGAGGCAGTTATAGCAATTACTGTGGATGAATCATTGAGGCGCTACTGCCATAGAATAAGGCGATCTGA
TTTCTGGGGTGGAGAGTCAGAACTCTTGGTTTTGTCTAAATTGTGTCGGCAGCCAATCATTATTTATATTCCAGAGCGTG
AGTACCATGGGCGTGGAAATGGTTTTATTCCTATAGCAGAGTATGGACTGGAATTCTCCAAGGACTCAAAACAGTGGAAG
AAAAAGGTGCCATTTTTTGCTTGCGTCTCTGCAGACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15901.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis