Browse Element(s) Details


Os.8225.1.S1_at

Description gb:AK058507.1
DB_XREF= gi:32968525
TID=Os.8225.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative LIM-domain protein (OJ1364E02.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G03, full insert sequence.
FL= gb:AK058507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1594011/11Pollen-specific protein SF3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15940Os.8225.1.S1_at11/113+8776940..8778881Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950Os.14701.1.S1_a_at11/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950Os.57467.1.A1_x_at5/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960Os.12244.1.S1_at11/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.57467.1.S1_x_at5/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.37773.1.S1_x_at2/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000Os.34102.1.S1_a_at10/113+8798197..8803386Variant SH3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8225.1.S1_at--364--5971Chr03:8777911..8777931 (21 bp)
GAGAAGTTGACTCCTGAGCTGACAA
LOC_Os03g15940
Os.8225.1.S1_at--103--2371Chr03:8778062..8778086 (25 bp)
AAAGCCGCACGCATGTTTTCAGGGA
LOC_Os03g15940
Os.8225.1.S1_at--683--2851Chr03:8778437..8778461 (25 bp)
AAGTCCTGCTTCAAATGTTCTCACG
LOC_Os03g15940
Os.8225.1.S1_at--711--3571Chr03:8778472..8778496 (25 bp)
CATTTCGCCATCCAATTATGCAGCT
LOC_Os03g15940
Os.8225.1.S1_at--805--7851Chr03:8778503..8778527 (25 bp)
GGTATCCTATACTGCAAGCACCATT
LOC_Os03g15940
Os.8225.1.S1_at--663--5031Chr03:8778626..8778650 (25 bp)
GCAGATTCCTCCTGAATGTACCATA
LOC_Os03g15940
Os.8225.1.S1_at--888--6971Chr03:8778643..8778667 (25 bp)
GTACCATATCTCCAGTGAGGCTTGA
LOC_Os03g15940
Os.8225.1.S1_at--933--4571Chr03:8778670..8778694 (25 bp)
GCGAAAATTCGGAAGCCCTCTGTTT
LOC_Os03g15940
Os.8225.1.S1_at--300--10811Chr03:8778705..8778729 (25 bp)
TTGTATGCCATGTTCCAGTTCTGAG
LOC_Os03g15940
Os.8225.1.S1_at--99--11Chr03:8778731..8778755 (25 bp)
ATACCGGGACCTATCAATTTCGTGT
LOC_Os03g15940
Os.8225.1.S1_at--1078--6471Chr03:8778835..8778859 (25 bp)
GATATACCGTACTCTATTTTGTTGA
LOC_Os03g15940
Target Sequence 
GAGAAGTTGACTCCTGAGCTGACAAGATCACCTAGCAAAGCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGCCAC
TTGCAGTAAAACAGCGTATCCTNCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAATGTTCT
CACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACT
TTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCCGAAGCACAGCCGGCACCACCAC
CGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTAC
AACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGAT
CACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTGTT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis