Browse Element(s) Details


Os.10388.1.S1_at

Description gb:AK120374.1
DB_XREF= gi:37989997
TID=Os.10388.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1012B02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071C06, full insert sequence.
FL= gb:AK120374.1 gb:AK099963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1592011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15940Os.8225.1.S1_at11/113+8776940..8778881Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950Os.14701.1.S1_a_at11/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950Os.57467.1.A1_x_at5/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960Os.12244.1.S1_at11/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.57467.1.S1_x_at5/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.37773.1.S1_x_at2/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10388.1.S1_at--408--6091Chr03:8768966..8768990 (25 bp)
GAGTACTACAAGGATCTCGGCTGCG
LOC_Os03g15920
Os.10388.1.S1_at--34--1831Chr03:8768774..8768798 (25 bp)
ACGCCTCGTTTCATCTGTCTGATGA
LOC_Os03g15920
Os.10388.1.S1_at--756--591Chr03:8768729..8768753 (25 bp)
ATGCCTCCTGCAAGGGAAATCCTGC
LOC_Os03g15920
Os.10388.1.S1_at--17--2391Chr03:8768701..8768725 (25 bp)
AAACGAGTGGATCCCATCAGCTGAC
LOC_Os03g15920
Os.10388.1.S1_at--793--5631Chr03:8768553..8768703 (25 bp)
GACACGGTGTATCCGGCGTCAGACA
LOC_Os03g15920
Os.10388.1.S1_at--69--2871Chr03:8768518..8768542 (25 bp)
AAGTGACAGCTGAGCAACGCGCGCT
LOC_Os03g15920
Os.10388.1.S1_at--758--2071Chr03:8768491..8768515 (25 bp)
ACATGACTACACGTACAGCCAGATG
LOC_Os03g15920
Os.10388.1.S1_at--1036--3371Chr03:8768476..8768500 (25 bp)
CAGCCAGATGTATGCATTCCACCAG
LOC_Os03g15920
Os.10388.1.S1_at--716--1691Chr03:8768441..8768465 (25 bp)
AGCCACACTTGGTTATTCACATAGG
LOC_Os03g15920
Os.10388.1.S1_at--91--8151Chr03:8768418..8768442 (25 bp)
GGACACATGCATCTTTACTGTTCTG
LOC_Os03g15920
Os.10388.1.S1_at--257--8791Chr03:8768376..8768400 (25 bp)
TGTTAACCGTGTTGTACTCCCAAGA
LOC_Os03g15920
Target Sequence 
GAGTACTACAAGGATCTCGGCTGCGTCGGCAAGCAGCACCACACGACTGGAACAGGGTTCATCAAGATGGACAAGCCCTC
GGCGGACGCCTCGTTTCATCTGTCTGATGACCCAGATGCATCGGAGCGCCATGCCTCCTGCAAGGGAAATCCTGCTACAA
ACGAGTGGATCCCATCAGCTGACACGGTGTATCCGGCGTCAGACAAGCCCAACAGAAGTGACAGCTGAGCAACGCGCGCT
CTACATGACTACACGTACAGCCAGATGTATGCATTCCACCAGCATATAAAGAAGCCACACTTGGTTATTCACATAGGACA
CATGCATCTTTACTGTTCTGCAAGGAGTTTCTTGTGGTGTTAACCGTGTTGTACTCCCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis