Browse Element(s) Details


Os.37394.1.S1_at

Description gb:AK058803.1
DB_XREF= gi:32968821
TID=Os.37394.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1012B02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-B05, full insert sequence.
FL= gb:AK058803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g159103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15940Os.8225.1.S1_at11/113+8776940..8778881Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950Os.14701.1.S1_a_at11/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950Os.57467.1.A1_x_at5/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960Os.12244.1.S1_at11/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.57467.1.S1_x_at5/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.37773.1.S1_x_at2/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37394.1.S1_at--994--4131Chr03:8767872..8767896 (25 bp)
CGCGCCCGTCCTGGGTTACGGTATG
LOC_Os03g15910
Os.37394.1.S1_at--209--1931Chr03:8767889..8767913 (25 bp)
ACGGTATGGCGTGGTACAGCCACTT
LOC_Os03g15910
Os.37394.1.S1_at--866--2151Chr03:8767904..8767928 (25 bp)
ACAGCCACTTCTTCGTGGAGGGCAA
LOC_Os03g15910
Os.37394.1.S1_at--543--8851Chr03:8768080..8768104 (25 bp)
TGATCCGCCGAAGTGCTCGCGATAG
NONE
Os.37394.1.S1_at--767--4791Chr03:8768094..8768118 (25 bp)
GCTCGCGATAGCAACATCTGGAAGT
NONE
Os.37394.1.S1_at--812--5311Chr03:8768114..8768138 (25 bp)
GAAGTGTTGATGTGTACTCCACCCT
NONE
Os.37394.1.S1_at--390--6991Chr03:8768127..8768151 (25 bp)
GTACTCCACCCTGTAATTTGCTAAT
NONE
Os.37394.1.S1_at--794--10351Chr03:8768179..8768203 (25 bp)
TTTATCATTTTCCTCGCCGATCTGT
NONE
Os.37394.1.S1_at--427--10651Chr03:8768188..8768212 (25 bp)
TTCCTCGCCGATCTGTTTTGGTTGC
NONE
Os.37394.1.S1_at--234--8271Chr03:8768259..8768283 (25 bp)
GGCAGTGGCTGCTTAACAAAATAAT
NONE
Os.37394.1.S1_at--99--691Chr03:8768282..8768306 (25 bp)
ATGACCAGCTACTAGACCATAACAT
NONE
Target Sequence 
CGCGCCCGTCCTGGGTTACGGTATGGCGTGGTACAGCCACTTCTTCGTGGAGGGCAACCGGCCAGCCACGTTCGGCCACC
CCGTCTGGTCTTTCCTCTGCGACCTCCGCATGTTCGCCCTCATCCTCACCGGCCGCATCGACGCCGAGCTCGCTCGCCTC
CGCCTCCAGCCGCCTCACGACGCCGCGGCTGCCTCTGCACACCGGGACTGATCCGCCGAAGTGCTCGCGATAGCAACATC
TGGAAGTGTTGATGTGTACTCCACCCTGTAATTTGCTAATCCAATTTGGTACTTTTTTTTTGTTGCTTTTATCATTTTCC
TCGCCGATCTGTTTTGGTTGCGGGGAAAGGGTTTGGATAAGCAGTGTATCCAAAATTAGTGTGGCTAGGCAGTGGCTGCT
TAACAAAATAATGACCAGCTACTAGACCATAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis