Browse Element(s) Details


Os.15901.1.S1_at

Description gb:AK068775.1
DB_XREF= gi:32978800
TID=Os.15901.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1012B02.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160P06, full insert sequence.
FL= gb:AK104949.1 gb:AK068775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1593011/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15940Os.8225.1.S1_at11/113+8776940..8778881Pollen-specific protein SF3, putative, expressed
LOC_Os03g15950Os.14701.1.S1_a_at11/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15950Os.57467.1.A1_x_at5/113+8779850..8785587Enolase, C-terminal TIM barrel domain containing protein, expressed
LOC_Os03g15960Os.12244.1.S1_at11/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.57467.1.S1_x_at5/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15960Os.37773.1.S1_x_at2/113+8784620..878560917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g15970OsAffx.10071.1.S1_at11/113+8786381..8788265transposon protein, putative, Mariner sub-class
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000Os.34102.1.S1_a_at10/113+8798197..8803386Variant SH3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15901.1.S1_at--194--2891Chr03:8774249..8774273 (25 bp)
AAGGTGCCAGTAAGACTGTTATACA
LOC_Os03g15930
Os.15901.1.S1_at--939--3851Chr03:8774264..8774288 (25 bp)
CTGTTATACAGTGGGAGGAATCATT
LOC_Os03g15930
Os.15901.1.S1_at--868--10271Chr03:8774293..8774317 (25 bp)
TTTGCTAGTATAACATGGTTGCACC
LOC_Os03g15930
Os.15901.1.S1_at--968--2491Chr03:8774304..8774328 (25 bp)
AACATGGTTGCACCGAACGTTATCA
LOC_Os03g15930
Os.15901.1.S1_at--496--5071Chr03:8774313..8774337 (25 bp)
GCACCGAACGTTATCAGTACCCTGA
LOC_Os03g15930
Os.15901.1.S1_at--230--6791Chr03:8774322..8774346 (25 bp)
GTTATCAGTACCCTGAAGGTCTGAA
LOC_Os03g15930
Os.15901.1.S1_at--714--5291Chr03:8774336..8774360 (25 bp)
GAAGGTCTGAACTATTTATGACAAC
LOC_Os03g15930
Os.15901.1.S1_at--156--8971Chr03:8774354..8774378 (25 bp)
TGACAACTGATTTTGATTCCATCAT
LOC_Os03g15930
Os.15901.1.S1_at--1160--6571Chr03:8774368..8774392 (25 bp)
GATTCCATCATTCCATTGTTATTCT
LOC_Os03g15930
Os.15901.1.S1_at--410--51Chr03:8774382..8774406 (25 bp)
ATTGTTATTCTTTGATCCCACGTAG
LOC_Os03g15930
Os.15901.1.S1_at--26--6391Chr03:8774395..8774419 (25 bp)
GATCCCACGTAGTTTTTTGCTTGCG
LOC_Os03g15930
Target Sequence 
AAGGTGCCAGTAAGACTGTTATACAGTGGGAGGAATCATTATGATTTGCTAGTATAACATGGTTGCACCGAACGTTATCA
GTACCCTGAAGGTCTGAACTATTTATGACAACTGATTTTGATTCCATCATTCCATTGTTATTCTTTGATCCCACGTAGTT
TTTTGCTTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis