Browse Element(s) Details


Os.7263.1.S1_at

Description gb:AK102684.1
DB_XREF= gi:32987893
TID=Os.7263.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) name (OJA1364E02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102K23, full insert sequence.
FL= gb:AK102684.1 gb:AK062265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1614011/11digalactosyldiacylglycerol synthase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein
LOC_Os03g16170Os.35013.1.S1_at11/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16170Os.27906.1.S1_a_at1/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16180NANA3+8904205..8905896retrotransposon protein, putative, unclassified
LOC_Os03g16190NANA3+8906767..8907291retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0019375biological_processgalactolipid biosynthesis
GO:0042550biological_processphotosystem I stabilization
GO:0005739cellular_componentmitochondrion
GO:0009707cellular_componentchloroplast outer membrane
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035250molecular_functionUDP-galactosyltransferase activity
GO:0046480molecular_functiongalactolipid galactosyltransferase activity
GO:0046481molecular_functionUDP-galactose:MGDG galactosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7263.1.S1_at--25--4531Chr03:8882292..8882316 (25 bp)
GCCCGTTGTGTTTTTGGTGCCATAC
LOC_Os03g16140
Os.7263.1.S1_at--463--311Chr03:8882271..8882295 (25 bp)
ATACCGAATACTCTGCAGCCTGATG
LOC_Os03g16140
Os.7263.1.S1_at--362--8211Chr03:8882212..8882236 (25 bp)
GGAATGACAGTCATTTCTTCCCACG
LOC_Os03g16140
Os.7263.1.S1_at--1147--3631Chr03:8882196..8882220 (25 bp)
CTTCCCACGCTGTTGTCAATGACAA
LOC_Os03g16140
Os.7263.1.S1_at--229--5271Chr03:8882169..8882193 (25 bp)
GAATGCCAACTAACAGCCCAGGGAA
LOC_Os03g16140
Os.7263.1.S1_at--1047--2171Chr03:8882044..8882068 (25 bp)
ACACTGGTATTGCAATTCTCCTTCA
LOC_Os03g16140
Os.7263.1.S1_at--14--3891Chr03:8881930..8881954 (25 bp)
CTGTCTTTTCATGTAGCCTGTGTAA
LOC_Os03g16140
Os.7263.1.S1_at--655--6931Chr03:8881904..8881928 (25 bp)
GTAAAGCTTACTGTTGCTTCCCGAG
LOC_Os03g16140
Os.7263.1.S1_at--788--4911Chr03:8881889..8881913 (25 bp)
GCTTCCCGAGTTTGGCACAATTTTA
LOC_Os03g16140
Os.7263.1.S1_at--473--6511Chr03:8881862..8881886 (25 bp)
GATATCTTGTCTGGTGTTTCACAAC
LOC_Os03g16140
Os.7263.1.S1_at--949--2631Chr03:8881840..8881864 (25 bp)
AACCATTTTTGTTGGCGTGCTGCTG
LOC_Os03g16140
Target Sequence 
GCCCGTTGTGTTTTTGGTGCCATACCGAATACTCTGCAGCCTGATGAACAGCAATGCAAGGAACTTGGCTGGAGGCTCCA
GGAATGACAGTCATTTCTTCCCACGCTGTTGTCAATGACAATAGAATGCCAACTAACAGCCCAGGGAACTTGGCTTGGGG
AACTAACTACGTAACGCAATTATCTTTTGCTCCAAAACTACGAAGGACTGAACAGACAAGGGTGNTTCTTGTTTTCTGCT
ATGGTGGTACACTGGTATTGCAATTCTCCTTCACAATTGTGGAGTGTCCATCAGACATCAGTTACTGTAATGCATCATAT
CTTGGAATTGTAAATGTGCGGCAGTTGAAGTGATTACCAATGCTGTCTTTTCATGTAGCCTGTGTAATGTAAAGCTTACT
GTTGCTTCCCGAGTTTGGCACAATTTTAAAGATATCTTGTCTGGTGTTTCACAACCATTTTTGTTGGCGTGCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis