Browse Element(s) Details


Os.56198.1.S1_at

Description gb:AK109598.1
DB_XREF= gi:32994807
TID=Os.56198.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-D09, full insert sequence.
FL= gb:AK109598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1615011/11mannose-1-phosphate guanyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein
LOC_Os03g16170Os.35013.1.S1_at11/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16170Os.27906.1.S1_a_at1/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16180NANA3+8904205..8905896retrotransposon protein, putative, unclassified
LOC_Os03g16190NANA3+8906767..8907291retrotransposon protein, putative, unclassified
LOC_Os03g16200NANA3+8910433..8910714hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009408biological_processresponse to heat
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010193biological_processresponse to ozone
GO:0019853biological_processL-ascorbic acid biosynthesis
GO:0030244biological_processcellulose biosynthesis
GO:0004475molecular_functionmannose-1-phosphate guanylyltransferase activity
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56198.1.S1_at--633--3431Chr03:8890625..8890649 (25 bp)
CAGATCAGATCGTCTCATCGTTCTT
LOC_Os03g16150
Os.56198.1.S1_at--831--3531Chr03:8890610..8890634 (25 bp)
CATCGTTCTTATGCTGCTTGCTGCA
LOC_Os03g16150
Os.56198.1.S1_at--1068--4911Chr03:8890595..8890619 (25 bp)
GCTTGCTGCATTTTTCGCAGGGTGA
LOC_Os03g16150
Os.56198.1.S1_at--743--711Chr03:8890445..8890469 (25 bp)
ATGATCCTGCATCAGGTCAGCACAA
LOC_Os03g16150
Os.56198.1.S1_at--272--7831Chr03:8890431..8890455 (25 bp)
GGTCAGCACAAATACTCCAATCTTT
LOC_Os03g16150
Os.56198.1.S1_at--817--751Chr03:8890313..8890337 (25 bp)
ATGTCAGTTTGTTCCATTACCCGAG
LOC_Os03g16150
Os.56198.1.S1_at--832--6651Chr03:8890268..8890292 (25 bp)
GTTGATGTTATTGGCCTCACACTCT
LOC_Os03g16150
Os.56198.1.S1_at--57--9711Chr03:8890252..8890276 (25 bp)
TCACACTCTAGTCATGTCTCTTATG
LOC_Os03g16150
Os.56198.1.S1_at--16--6591Chr03:8890206..8890230 (25 bp)
GATTCCTCACAACAGTAGCATCTAT
LOC_Os03g16150
Os.56198.1.S1_at--271--4972Chr08:23134106..23134131 (24 bp)
GCATCTATTTGCATCACTGAATTTG
NONE
Os.56198.1.S1_at--806--1111Chr03:8890109..8890133 (25 bp)
AGTGCAGTCGTAGGGAACCGTGTCC
LOC_Os03g16150
Target Sequence 
CAGATCAGATCGTCTCATCGTTCTTATGCTGCTTGCTGCATTTTTCGCAGGGTGAGGAGGAGCTGAGTTAGCAGGGCTGC
GACCATGAAGGCGCTCATTCTCGTGGGAGGCTTCGGCACTCGCCTGCGGCCGCTGACTCTCAGCGTGCCAAAGCCGCTCG
TCGATTTCGGGAACAAGCCCATGATCCTGCATCAGGTCAGCACAAATACTCCAATCTTTTTATCTCACAATACAGTCTTT
TCAGTTCGTCAGGCATGACAATAGAGTAGTTATGGAGAACTTATTTGGGGAAATGGTAATGCAAGATGAAAAATGTCAGT
TTGTTCCATTACCCGAGTTGGGGATAAGATGTAGACAGTTGATGTTATTGGCCTCACACTCTAGTCATGTCTCTTATGAT
GGATCGATCCATATGAGTTGATTCCTCACAACAGTAGCATCTATTTGCATCACTGAATTTGTTCATTCTAGTCATAAATA
GTTGTGACAAATTGATATTACATCCGTCCCAAAATAAGTGCAGTCGTAGGGAACCGTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis