Browse Element(s) Details


Os.35013.1.S1_at

Description gb:AK069274.1
DB_XREF= gi:32979298
TID=Os.35013.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Serinethreonine phosphatases (OJA1364E02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012K18, full insert sequence.
FL= gb:AK069274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1617011/11Protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein
LOC_Os03g16170Os.35013.1.S1_at11/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16170Os.27906.1.S1_a_at1/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16180NANA3+8904205..8905896retrotransposon protein, putative, unclassified
LOC_Os03g16190NANA3+8906767..8907291retrotransposon protein, putative, unclassified
LOC_Os03g16200NANA3+8910433..8910714hypothetical protein
LOC_Os03g16210Os.30077.1.S1_at11/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.2.S1_at8/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.3.S1_at5/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220OsAffx.3252.1.S1_at11/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220Os.16159.1.S1_at10/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35013.1.S1_at--223--391Chr03:8900761..8900785 (25 bp)
ATCAGACATACTACTCCTCTCGGTT
LOC_Os03g16170
Os.35013.1.S1_at--1101--451Chr03:8900728..8900752 (25 bp)
ATCTCTAACTCGAATTCACCTGGAC
LOC_Os03g16170
Os.35013.1.S1_at--810--10511Chr03:8900714..8900738 (25 bp)
TTCACCTGGACGAAGCCGTGATCAA
LOC_Os03g16170
Os.35013.1.S1_at--315--5291Chr03:8900659..8900683 (25 bp)
GAATGTGGCATCCTCAAAGCATATA
LOC_Os03g16170
Os.35013.1.S1_at--981--1531Chr03:8900619..8900643 (25 bp)
AGCATTATTTCGTTCACTTCCTTTC
LOC_Os03g16170
Os.35013.1.S1_at--572--8651Chr03:8900592..8900616 (25 bp)
TGGGCGTTTGTGATCTCGTCAGACA
LOC_Os03g16170
Os.35013.1.S1_at--931--4531Chr03:8900562..8900586 (25 bp)
GCCCGCTCCTTATTTCAGCAAAAAA
LOC_Os03g16170
Os.35013.1.S1_at--33--1591Chr03:8900537..8900561 (25 bp)
AGCTCATGTGTTTCCGATGTTTGAA
LOC_Os03g16170
Os.35013.1.S1_at--434--5971Chr03:8900512..8900536 (25 bp)
GAGAAACTTCCTCAAGCGTCAGAGA
LOC_Os03g16170
Os.35013.1.S1_at--595--6931Chr03:8900483..8900507 (25 bp)
GTAGTATAATTGAGTGTCCCCTTTG
LOC_Os03g16170
Os.35013.1.S1_at--492--7251Chr03:8900468..8900492 (25 bp)
GTCCCCTTTGCTCGTGGAAATATAA
LOC_Os03g16170
Target Sequence 
ATCAGACATACTACTCCTCTCGGTTTCCTGGCCATCTCTAACTCGAATTCACCTGGACGAAGCCGTGATCAAACAGAACG
TTCCGAATTATGTGATCAAACAGAATGTGGCATCCTCAAAGCATATAATTGCAGATTATTATAGCATTATTTCGTTCACT
TCCTTTCTTTGGGCGTTTGTGATCTCGTCAGACAGATCAGCCCGCTCCTTATTTCAGCAAAAAAAGCTCATGTGTTTCCG
ATGTTTGAAGAGAAACTTCCTCAAGCGTCAGAGAAATTGTAGTATAATTGAGTGTCCCCTTTGCTCGTGGAAATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis