Browse Element(s) Details


OsAffx.3252.1.S1_at

Description tigr:9631.m01581
TID=OsAffx.3252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, short chain dehydrogenasereductase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1622011/11Tropinone reductase homolog At1g07440, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16170Os.35013.1.S1_at11/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16170Os.27906.1.S1_a_at1/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16180NANA3+8904205..8905896retrotransposon protein, putative, unclassified
LOC_Os03g16190NANA3+8906767..8907291retrotransposon protein, putative, unclassified
LOC_Os03g16200NANA3+8910433..8910714hypothetical protein
LOC_Os03g16210Os.30077.1.S1_at11/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.2.S1_at8/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.3.S1_at5/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220OsAffx.3252.1.S1_at11/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220Os.16159.1.S1_at10/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230Os.34878.1.S1_a_at11/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230OsAffx.17694.1.S1_x_at1/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16250Os.22646.1.S1_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.22646.1.S1_x_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.21756.5.A1_x_at3/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.16205.1.S1_at2/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.26442.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.52979.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16260Os.43946.1.S1_at11/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260Os.43946.3.S1_x_at10/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260OsAffx.25423.2.S1_x_at6/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16270NANA3+8947963..8948547hypothetical protein
LOC_Os03g16280NANA3+8950820..8953624retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3252.1.S1_at--974--3551Chr03:8925188..8925212 (25 bp)
CATCTTCTTGTTTCTGAACCTGACT
LOC_Os03g16220
OsAffx.3252.1.S1_at--141--7451Chr03:8925128..8925152 (25 bp)
GTGTCACCAGATTTCACAAGCTTTG
LOC_Os03g16220
OsAffx.3252.1.S1_at--386--2971Chr03:8925094..8925118 (25 bp)
AATGTCCAACCGAAACTAGCTCAGC
LOC_Os03g16220
OsAffx.3252.1.S1_at--162--2031Chr03:8925080..8925104 (25 bp)
ACTAGCTCAGCCTCACTTGTTTTTT
LOC_Os03g16220
OsAffx.3252.1.S1_at--1054--3351Chr03:8925051..8925075 (25 bp)
CACCTTTCTTTTCTGTTTGACTTCA
LOC_Os03g16220
OsAffx.3252.1.S1_at--18--10771Chr03:8925035..8925059 (25 bp)
TTGACTTCAGTTTCATCTTGAGGCT
LOC_Os03g16220
OsAffx.3252.1.S1_at--427--311Chr03:8924995..8925019 (25 bp)
ATAGCCTTCTTAACCTGCTGATCAA
LOC_Os03g16220
OsAffx.3252.1.S1_at--621--9891Chr03:8924855..8924879 (25 bp)
TACTTCTCTTATTCCTTAGTCCCAA
LOC_Os03g16220
OsAffx.3252.1.S1_at--118--4171Chr03:8924835..8924859 (25 bp)
CCCAAATTTGCCTCTTATACTGTTA
LOC_Os03g16220
OsAffx.3252.1.S1_at--472--2871Chr03:8924766..8924790 (25 bp)
AAGTGTCCTGAGTACTGCACGCTGA
LOC_Os03g16220
OsAffx.3252.1.S1_at--46--8991Chr03:8924744..8924768 (25 bp)
TGAACTCTTCTTTTACTCCAGCTTA
LOC_Os03g16220
Target Sequence
CATCTTCTTGTTTCTGAACCTGACTAAGCTATATTTATTTTACCAATTTGTCTATACAAAGTGTCACCAGATTTCACAAG
CTTTGGGTTGGAAAAATGTCCAACCGAAACTAGCTCAGCCTCACTTGTTTTTTTTTCCACCTTTCTTTTCTGTTTGACTT
CAGTTTCATCTTGAGGCTGATTTAAAATTAATTATAGCCTTCTTAACCTGCTGATCAAGTTTTTTTCATTCATGTTCATT
TGTAATTGGATAGCATAGAAGCACATCATAAATATGATTGTGCATTTTTTACTCTATGCCCATGATTACCTCAAAATGTG
ACAGCGCACACCCTACTTCTCTTATTCCTTAGTCCCAAATTTGCCTCTTATACTGTTAATATATTCCACGATATAAAAAG
GTTGTAGCACAGCTACAGGTGTAAGTGTCCTGAGTACTGCACGCTGAACTCTTCTTTTACTCCAGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis