Browse Element(s) Details


Os.43946.3.S1_x_at

Description gb:NM_187489.1
DB_XREF= gi:34902063
GEN=OSJNBa0071M09.12
TID=Os.43946.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43946 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) protein kinase (OSJNBa0071M09.12), mRNA.
PROD=protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1626010/11Protein kinase domain containing protein, expressed
LOC_Os03g387107/11Protein kinase domain containing protein
LOC_Os09g145807/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16210Os.30077.1.S1_at11/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.2.S1_at8/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.3.S1_at5/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220OsAffx.3252.1.S1_at11/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220Os.16159.1.S1_at10/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230Os.34878.1.S1_a_at11/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230OsAffx.17694.1.S1_x_at1/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16250Os.22646.1.S1_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.22646.1.S1_x_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.21756.5.A1_x_at3/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.16205.1.S1_at2/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.26442.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.52979.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16260Os.43946.1.S1_at11/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260Os.43946.3.S1_x_at10/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260OsAffx.25423.2.S1_x_at6/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16270NANA3+8947963..8948547hypothetical protein
LOC_Os03g16280NANA3+8950820..8953624retrotransposon protein, putative, unclassified
LOC_Os03g16290Os.32462.1.S1_a_at10/113+8962056..8963231fringe protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43946.3.S1_x_at--113--4132Chr09:8631226..8631247 (22 bp)
CGCTCGACACGCATTTACACGGGAA
LOC_Os09g14580
Os.43946.3.S1_x_at--1017--7553Chr09:8631034..8631057 (24 bp)
GGGCCACCTCTGGATTGGCAGCAAA
LOC_Os09g14580
Os.43946.3.S1_x_at--461--7674Chr02:28274339..28274359 (21 bp)
GGGTTTGGCCTATCTACACGATGAC
NONE
Os.43946.3.S1_x_at--425--3353Chr09:8630859..8630989 (25 bp)
CACGATGACTGTTCTCCTAAAATTA
LOC_Os09g14580
Os.43946.3.S1_x_at--1013--6531Chr03:8944240..8944386 (25 bp)
GATTTTGAGCCCAAGGTTGCAGATT
LOC_Os03g16260
Os.43946.3.S1_x_at--614--1591Chr03:8944036..8944060 (25 bp)
AGCTCCAGAGTTTTTGTCTAGCGGG
LOC_Os03g16260
Os.43946.3.S1_x_at--652--1673Chr09:8630372..8630396 (25 bp)
AGCCGATGTCTTTGCTTTTGGTGTC
LOC_Os09g14580
Os.43946.3.S1_x_at--332--7753Chr09:8630353..8630377 (25 bp)
GGTGTCGTCCTCTTGGAACTGATAA
LOC_Os09g14580
Os.43946.3.S1_x_at--250--2953Chr09:8630324..8630348 (25 bp)
AAGGCTGCCGGTTCAGTCATCTGAG
LOC_Os09g14580
Os.43946.3.S1_x_at--415--1191Chr03:8943765..8943928 (25 bp)
AGTTGCTTGGGCGAAACCCTTGCTT
LOC_Os03g16260
Os.43946.3.S1_x_at--1160--5251Chr03:8943658..8943682 (25 bp)
GAATGATCGAGTGTGCCGCCGCTGC
LOC_Os03g16260
Target Sequence 
CGCTCGACACGCATTTACACGGGAACAAGGGGCCACCTCTGGATTGGCAGCAAAGATGGAAAATCGCTGTGGGGTCTGCA
AGGGGTTTGGCCTATCTACACGATGACTGTTCTCCTAAAATTATACATCGTGATGTCAAGGCATCCAATATTCTGCTGGA
TCATGATTTTGAGCCCAAGGTTGCAGATTTTGGTCTAGCAAAGTATCAACCAGGAAACCACACTCACGTTTCCACAAGAA
TAATGGGCACATTTGGGTACATAGCTCCAGAGTTTTTGTCTAGCGGGAAACTTACTGACAAAGCCGATGTCTTTGCTTTT
GGTGTCGTCCTCTTGGAACTGATAACTGGAAGGCTGCCGGTTCAGTCATCTGAGTCTTACATGGATAGCACGTTAGTTGC
TTGGGCGAAACCCTTGCTTTCCGAAGCTACGGAGGAAGGCAACTTTGATATCCTTGTTGATCCAGATATTGGAGATGATT
ATGATGAAAACATAATGATGCGAATGATCGAGTGTGCCGCCGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43946.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis