Browse Element(s) Details


Os.32462.1.S1_a_at

Description gb:AK104544.1
DB_XREF= gi:32989753
TID=Os.32462.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0071M09.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B09, full insert sequence.
FL= gb:AK060334.1 gb:AK104544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1629010/11fringe protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16250Os.22646.1.S1_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.22646.1.S1_x_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.21756.5.A1_x_at3/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.16205.1.S1_at2/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.26442.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.52979.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16260Os.43946.1.S1_at11/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260Os.43946.3.S1_x_at10/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260OsAffx.25423.2.S1_x_at6/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16270NANA3+8947963..8948547hypothetical protein
LOC_Os03g16280NANA3+8950820..8953624retrotransposon protein, putative, unclassified
LOC_Os03g16290Os.32462.1.S1_a_at10/113+8962056..8963231fringe protein, putative, expressed
LOC_Os03g16300OsAffx.9045.1.S1_x_at1/113+8976295..8981592transposon protein, putative, unclassified
LOC_Os03g16300OsAffx.9045.1.S1_at1/113+8976295..8981592transposon protein, putative, unclassified
LOC_Os03g16310NANA3+8982677..8985289retrotransposon protein, putative, LINE subclass
LOC_Os03g16320OsAffx.25106.1.S1_x_at11/113+8985918..8988359hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32462.1.S1_a_at--51--4011Chr03:8962516..8962540 (25 bp)
CGTGCCACAGGAAGCCCATAATGTT
LOC_Os03g16290
Os.32462.1.S1_a_at--33--371Chr03:8962533..8962557 (25 bp)
ATAATGTTCTACCTGGACCGCGTCA
LOC_Os03g16290
Os.32462.1.S1_a_at--1144--7091Chr03:8962554..8962578 (25 bp)
GTCACGGCGATGTCGACGTCGACCA
LOC_Os03g16290
Os.32462.1.S1_a_at--1066--1891Chr03:8962569..8962593 (25 bp)
ACGTCGACCACGAACTGGACCTTGA
LOC_Os03g16290
Os.32462.1.S1_a_at--113--4371Chr03:8962576..8962600 (25 bp)
CCACGAACTGGACCTTGACGGAGTA
LOC_Os03g16290
Os.32462.1.S1_a_at--304--4391Chr03:8962657..8962681 (25 bp)
CCAAGGTGCAGATGATCCAGGTGAT
LOC_Os03g16290
Os.32462.1.S1_a_at--56--6371Chr03:8962670..8962694 (25 bp)
GATCCAGGTGATCGCGCTTAAGATG
LOC_Os03g16290
Os.32462.1.S1_a_at--762--531Chr03:8962680..8962704 (25 bp)
ATCGCGCTTAAGATGAACCCTGCCA
LOC_Os03g16290
Os.32462.1.S1_a_at--770--5431NONE
GAACCCTGCCATTTGGAAACGGGCA
NONE
Os.32462.1.S1_a_at--153--7611Chr03:8962882..8962905 (24 bp)
GGGCACCACGGAGACAATGCTGCAA
LOC_Os03g16290
Os.32462.1.S1_a_at--912--7611Chr03:8962926..8962950 (25 bp)
GGGACAAGTTGATCGTCAAAATACA
LOC_Os03g16290
Target Sequence 
CGTGCCACAGGAAGCCCATAATGTTCTACCTGGACCGCGTCACGGCGATGTCGACGTCGACCACGAACTGGACCTTGACG
GAGTACGTGCCGGAGGTGTTGTCCGGCGAACGCTGCAACACCACCGGCTTCGACGCGGCCACCAAGGTGCAGATGATCCA
GGTGATCGCGCTTAAGATGAACCCTGCCATTTGGAAACGGGCACCACGGAGACAATGCTGCAAGATGCAGAACGCAAACG
AAGGGGACAAGTTGATCGTCAAAATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32462.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis