Browse Element(s) Details


OsAffx.25106.1.S1_x_at

Description tigr:9631.m01591
TID=OsAffx.25106.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1632011/11hypothetical protein
LOC_Os04g5084010/11hypothetical protein
LOC_Os01g5023010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16290Os.32462.1.S1_a_at10/113+8962056..8963231fringe protein, putative, expressed
LOC_Os03g16300OsAffx.9045.1.S1_x_at1/113+8976295..8981592transposon protein, putative, unclassified
LOC_Os03g16300OsAffx.9045.1.S1_at1/113+8976295..8981592transposon protein, putative, unclassified
LOC_Os03g16310NANA3+8982677..8985289retrotransposon protein, putative, LINE subclass
LOC_Os03g16320OsAffx.25106.1.S1_x_at11/113+8985918..8988359hypothetical protein
LOC_Os03g16334Os.37699.2.S1_at11/113+8990657..8995631fringe protein, putative, expressed
LOC_Os03g16334Os.37699.3.S1_x_at11/113+8990657..8995631fringe protein, putative, expressed
LOC_Os03g16350Os.10839.1.S1_at11/113+9001646..9003025DNA-binding protein, putative, expressed
LOC_Os03g16369Os.20045.1.S1_at11/113+9007838..9014353retrotransposon protein, putative, unclassified, expressed
LOC_Os03g16369Os.20045.2.S1_x_at11/113+9007838..9014353retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25106.1.S1_x_at--338--6591Chr03:8986425..8986449 (25 bp)
GATTGATGACATTGTGGCGCCGCCG
LOC_Os03g16320
OsAffx.25106.1.S1_x_at--495--6153Chr04:29851776..29851800 (25 bp)
GAGGTCGCCACCAAGATCGCCGTGT
LOC_Os04g50840
OsAffx.25106.1.S1_x_at--776--9213Chr04:29851741..29851765 (25 bp)
TCCACATGGGACGACGCCTCAAGAT
LOC_Os04g50840
OsAffx.25106.1.S1_x_at--824--9713Chr04:29851723..29851747 (25 bp)
TCAAGATCCGCACAAGGCAGCACAG
LOC_Os04g50840
OsAffx.25106.1.S1_x_at--284--1853Chr04:29851686..29851710 (25 bp)
ACGCAGTGAGCGCATTGCCAAGCAA
LOC_Os04g50840
OsAffx.25106.1.S1_x_at--957--1873Chr04:29851649..29851673 (25 bp)
ACGATGGAGCGCTGCCAACGCGTTC
LOC_Os04g50840
OsAffx.25106.1.S1_x_at--813--2593Chr04:29851633..29851657 (25 bp)
AACGCGTTCTCTTCAAAAGGCTGGG
LOC_Os04g50840
OsAffx.25106.1.S1_x_at--286--2953Chr04:29851591..29851615 (25 bp)
AAGGCGCTTCAATTGAGCAGGTCAT
LOC_Os04g50840
OsAffx.25106.1.S1_x_at--251--6093Chr04:29851562..29851586 (25 bp)
GAGTACGTCGCCATGTTCGATGGCC
LOC_Os04g50840
OsAffx.25106.1.S1_x_at--705--1733Chr04:29851505..29851529 (25 bp)
ACCATCTTCGGCATCGACGACGAAG
LOC_Os04g50840
OsAffx.25106.1.S1_x_at--795--613Chr04:29851465..29851489 (25 bp)
ATGCGGCGCTGATATCTCTAGTTGG
LOC_Os04g50840
Target Sequence 
GATTGATGACATTGTGGCGCCGCCGCCACCTTCCCCGGTTGCCACCCAGCTTGCCCAAGCAGCAGCCTCGGCGTCACCGA
TCTCGACGGGCGTCCTCGATGCTCTGTTCGCCTCGCCGCCGCAACCGATCATCGCCTCGCCGCCGAGGTCGCCACCAAGA
TCGCCGTGTGCGCGACCGCTCCACATGGGACGACGCCTCAAGATCCGCACAAGGCAGCACAGCCAGCCCACCCGACGCAG
TGAGCGCATTGCCAAGCAACCAGCACGGCCGACGATGGAGCGCTGCCAACGCGTTCTCTTCAAAAGGCTGGGCCTCCTCA
ACGGCAAGGAAGGCGCTTCAATTGAGCAGGTCATCGCCGAGTACGTCGCCATGTTCGATGGCCCACTGCCGGCGCACGTC
ATCGCCGCCCTCACCACCATCTTCGGCATCGACGACGAAGAGCAGGAGACAATGGATGCGGCGCTGATATCTCTAGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25106.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis