Browse Element(s) Details


Os.37699.2.S1_at

Description gb:AK101153.1
DB_XREF= gi:32986362
TID=Os.37699.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0071M09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027D03, full insert sequence.
FL= gb:AK101153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1633411/11fringe protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16300OsAffx.9045.1.S1_x_at1/113+8976295..8981592transposon protein, putative, unclassified
LOC_Os03g16300OsAffx.9045.1.S1_at1/113+8976295..8981592transposon protein, putative, unclassified
LOC_Os03g16310NANA3+8982677..8985289retrotransposon protein, putative, LINE subclass
LOC_Os03g16320OsAffx.25106.1.S1_x_at11/113+8985918..8988359hypothetical protein
LOC_Os03g16334Os.37699.2.S1_at11/113+8990657..8995631fringe protein, putative, expressed
LOC_Os03g16334Os.37699.3.S1_x_at11/113+8990657..8995631fringe protein, putative, expressed
LOC_Os03g16350Os.10839.1.S1_at11/113+9001646..9003025DNA-binding protein, putative, expressed
LOC_Os03g16369Os.20045.1.S1_at11/113+9007838..9014353retrotransposon protein, putative, unclassified, expressed
LOC_Os03g16369Os.20045.2.S1_x_at11/113+9007838..9014353retrotransposon protein, putative, unclassified, expressed
LOC_Os03g16390Os.27177.1.S1_at11/113+9018621..9020552expressed protein
LOC_Os03g16390OsAffx.20425.1.S1_x_at2/113+9018621..9020552expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37699.2.S1_at--437--6791Chr03:8995162..8995186 (25 bp)
GTTTTGCCAACAGCACGGAGGGCTA
LOC_Os03g16334
Os.37699.2.S1_at--1114--10051Chr03:8995200..8995224 (25 bp)
TAGTAGCGGCTAGTGCCATGACACC
LOC_Os03g16334
Os.37699.2.S1_at--437--9191Chr03:8995213..8995237 (25 bp)
TGCCATGACACCGAACTGACTGAAG
LOC_Os03g16334
Os.37699.2.S1_at--784--2131Chr03:8995281..8995305 (25 bp)
ACAGATTCTGGTTTGTCTTCGTTGT
LOC_Os03g16334
Os.37699.2.S1_at--806--7131Chr03:8995295..8995319 (25 bp)
GTCTTCGTTGTGCACGTACAAGTGA
LOC_Os03g16334
Os.37699.2.S1_at--564--3211Chr03:8995313..8995337 (25 bp)
CAAGTGATTATACGGCTCGTCAGGC
LOC_Os03g16334
Os.37699.2.S1_at--974--311Chr03:8995359..8995383 (25 bp)
ATACGCATGATTGCATACCCCGGGT
LOC_Os03g16334
Os.37699.2.S1_at--820--2131Chr03:8995386..8995410 (25 bp)
ACAGTAATCCGTTTGGCTCGAGCGC
LOC_Os03g16334
Os.37699.2.S1_at--158--4811Chr03:8995401..8995425 (25 bp)
GCTCGAGCGCTCTTTTTCTGTAAAG
LOC_Os03g16334
Os.37699.2.S1_at--418--7711Chr03:8995527..8995551 (25 bp)
GGTGGTATTTATCTTCTGGAGGTAC
LOC_Os03g16334
Os.37699.2.S1_at--736--6991Chr03:8995548..8995572 (25 bp)
GTACTTTCAGTTCTTCGTGGATCCA
LOC_Os03g16334
Target Sequence 
GTTTTGCCAACAGCACGGAGGGCTAGATGCCAAGATTTTAGTAGCGGCTAGTGCCATGACACCGAACTGACTGAAGAGGA
CGGCAGGGTGAAACACCGTATTTCNCTGCGGATTTTTGGACAGATTCTGGTTTGTCTTCGTTGTGCACGTACAAGTGATT
ATACGGCTCGTCAGGCCGCAGACACATGCTGACATGCATACGCATGATTGCATACCCCGGGTACACAGTAATCCGTTTGG
CTCGAGCGCTCTTTTTCTGTAAAGAGCTGTAAAGGGAGTGGTGATCAGACTTAACGATTTCGACATGTAAAGCGTAGTAG
GACTAGTTTGAAAGGATGGTCTTTTCACNNTTTTGAGAAAGAAAAGGTGGTATTTATCTTCTGGAGGTACTTTCAGTTCT
TCGTGGATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37699.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis