Browse Element(s) Details


Os.27177.1.S1_at

Description gb:AK108185.1
DB_XREF= gi:32993394
TID=Os.27177.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1261C08.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-B08, full insert sequence.
FL= gb:AK108185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1639011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16334Os.37699.2.S1_at11/113+8990657..8995631fringe protein, putative, expressed
LOC_Os03g16334Os.37699.3.S1_x_at11/113+8990657..8995631fringe protein, putative, expressed
LOC_Os03g16350Os.10839.1.S1_at11/113+9001646..9003025DNA-binding protein, putative, expressed
LOC_Os03g16369Os.20045.1.S1_at11/113+9007838..9014353retrotransposon protein, putative, unclassified, expressed
LOC_Os03g16369Os.20045.2.S1_x_at11/113+9007838..9014353retrotransposon protein, putative, unclassified, expressed
LOC_Os03g16390Os.27177.1.S1_at11/113+9018621..9020552expressed protein
LOC_Os03g16390OsAffx.20425.1.S1_x_at2/113+9018621..9020552expressed protein
LOC_Os03g16400Os.5247.1.S1_at11/113+9026627..9030507expressed protein
LOC_Os03g16400Os.799.2.S1_x_at4/113+9026627..9030507expressed protein
LOC_Os03g16410NANA3+9030906..9031373hypothetical protein
LOC_Os03g16420OsAffx.20370.1.S1_at11/113+9041840..9042763retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g16430Os.27006.1.S1_at11/113+9043907..9047100Sigma-70 region 3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27177.1.S1_at--871--9331Chr03:9019016..9019040 (25 bp)
TCGCCGACCGGCACAAGGCAGAGAA
LOC_Os03g16390
Os.27177.1.S1_at--425--931Chr03:9019001..9019025 (25 bp)
AGGCAGAGAATGTCATCGTCGAGGT
LOC_Os03g16390
Os.27177.1.S1_at--1061--4771Chr03:9018962..9018986 (25 bp)
GCTGCGTTTGCTGGTACGACGATGA
LOC_Os03g16390
Os.27177.1.S1_at--309--3911Chr03:9018952..9018976 (25 bp)
CTGGTACGACGATGAGCGACGCCGT
LOC_Os03g16390
Os.27177.1.S1_at--187--10031Chr03:9018903..9018927 (25 bp)
TAGACTGTTGGGTCTGGCGCTCTAC
LOC_Os03g16390
Os.27177.1.S1_at--1030--9511Chr03:9018883..9018907 (25 bp)
TCTACTGCCCGGTATATTGGCATGG
LOC_Os03g16390
Os.27177.1.S1_at--435--2711Chr03:9018853..9018877 (25 bp)
AAGCATAAAGCATTTGTATCCACCA
LOC_Os03g16390
Os.27177.1.S1_at--789--1731Chr03:9018832..9018856 (25 bp)
ACCATTATGGATACACCGCAGGACA
LOC_Os03g16390
Os.27177.1.S1_at--720--6111Chr03:9018785..9018809 (25 bp)
GAGTGACACTGTGTGCTAGCTAGCT
LOC_Os03g16390
Os.27177.1.S1_at--704--6731Chr03:9018756..9018780 (25 bp)
GTTCTTGCATCCCAGCGAGAAAAAA
LOC_Os03g16390
Os.27177.1.S1_at--440--6791Chr03:9018692..9018716 (25 bp)
GTTTATTCAAGGGTAGGACATGTCT
LOC_Os03g16390
Target Sequence 
TCGCCGACCGGCACAAGGCAGAGAATGTCATCGTCGAGGTGCTCATCGGGCTCAGCTGCGTTTGCTGGTACGACGATGAG
CGACGCCGTCCGGCCGATTGGGACGACGACGACTAGACTGTTGGGTCTGGCGCTCTACTGCCCGGTATATTGGCATGGTA
TATAAGCATAAAGCATTTGTATCCACCATTATGGATACACCGCAGGACAATTTTTTTTGTTATGATTTGAAGAGTGACAC
TGTGTGCTAGCTAGCTAAANGTTCTTGCATCCCAGCGAGAAAAAACAATATGATACCNCTGTAAATACGTGGTAATGTAC
ATATGTTTATTCAAGGGTAGGACATGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis