Browse Element(s) Details


Os.5247.1.S1_at

Description gb:AK070218.1
DB_XREF= gi:32980242
TID=Os.5247.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045D22, full insert sequence.
FL= gb:AK070218.1 gb:AK119531.1 gb:AK099207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1640011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16350Os.10839.1.S1_at11/113+9001646..9003025DNA-binding protein, putative, expressed
LOC_Os03g16369Os.20045.1.S1_at11/113+9007838..9014353retrotransposon protein, putative, unclassified, expressed
LOC_Os03g16369Os.20045.2.S1_x_at11/113+9007838..9014353retrotransposon protein, putative, unclassified, expressed
LOC_Os03g16390Os.27177.1.S1_at11/113+9018621..9020552expressed protein
LOC_Os03g16390OsAffx.20425.1.S1_x_at2/113+9018621..9020552expressed protein
LOC_Os03g16400Os.5247.1.S1_at11/113+9026627..9030507expressed protein
LOC_Os03g16400Os.799.2.S1_x_at4/113+9026627..9030507expressed protein
LOC_Os03g16410NANA3+9030906..9031373hypothetical protein
LOC_Os03g16420OsAffx.20370.1.S1_at11/113+9041840..9042763retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g16430Os.27006.1.S1_at11/113+9043907..9047100Sigma-70 region 3 family protein, expressed
LOC_Os03g16440Os.12583.1.S1_at11/113+9047443..9053002chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os03g16450Os.12583.3.S1_x_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16450Os.12583.2.S1_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16460Os.38256.1.S1_at11/113+9055024..9058460HEAT repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5247.1.S1_at--175--10691Chr03:9029697..9029721 (25 bp)
TTCCAACGACTCTCCACATAATGTG
LOC_Os03g16400
Os.5247.1.S1_at--452--2091Chr03:9029712..9029736 (25 bp)
ACATAATGTGGTGCACTTGGACATA
LOC_Os03g16400
Os.5247.1.S1_at--1033--2811Chr03:9030009..9030033 (25 bp)
AAGATTGTCATCCTTTCAGAAAGGC
LOC_Os03g16400
Os.5247.1.S1_at--872--1671Chr03:9030081..9030105 (25 bp)
AGCCTGGACAGTCATCTTCCTCAGA
LOC_Os03g16400
Os.5247.1.S1_at--205--10031Chr03:9030222..9030246 (25 bp)
TAGAATGCAGAGTTCCCTTGGCCTA
LOC_Os03g16400
Os.5247.1.S1_at--859--3591Chr03:9030238..9030262 (25 bp)
CTTGGCCTAGCGTTCATCAATTTGA
LOC_Os03g16400
Os.5247.1.S1_at--124--6091Chr03:9030294..9030318 (25 bp)
GAGTAGCCCGTACTGTATTTCTGGG
LOC_Os03g16400
Os.5247.1.S1_at--758--6431Chr03:9030333..9030357 (25 bp)
GATCATGCTCTGGATATGTGACTAT
LOC_Os03g16400
Os.5247.1.S1_at--724--7371Chr03:9030350..9030374 (25 bp)
GTGACTATCAGCCTGTATTCTATTT
LOC_Os03g16400
Os.5247.1.S1_at--841--6951Chr03:9030395..9030419 (25 bp)
GTAGACACTCTGTTCGTTAGCTGAA
LOC_Os03g16400
Os.5247.1.S1_at--99--6251Chr03:9030458..9030482 (25 bp)
GATGGAGAGGTTGCTCGGCTCCCAA
LOC_Os03g16400
Target Sequence 
TTCCAACGACTCTCCACATAATGTGGTGCACTTGGACATATTCAAAGGAACAAAAGGAGGGGATCTATCTGAGGATGAAG
GGGTNCGTGAAAGATTGTCATCCTTTCAGAAAGGCGATGGATGAAATATCTCTAAAACCCATAGAAGTCAGGAAGAAAGT
TCAGCCTGGACAGTCATCTTCCTCAGATGCAGAAATCGAGTACAGAAGGGCTAGGAGTTTAAGAGAAGCCAATGGAGTTT
TGTCATGGCGCAGCACCCTGGCAAGGCAACTACAGTAACGATGTGGTAATACGCAGGATAAGATAGAATGCAGAGTTCCC
TTGGCCTAGCGTTCATCAATTTGAGCTGTTGTTAGAAGTAAAATCTTTAGGCGAAGAGTAGCCCGTACTGTATTTCTGGG
GATTTCTACTGCCAGATCATGCTCTGGATATGTGACTATCAGCCTGTATTCTATTTAAATTCCAAGTTCGTCTTTTGTAG
ACACTCTGTTCGTTAGCTGAATCACAGAATCAGTGAAATGGAAGTGCATTTTGAGGAGAGATGGAGAGGTTGCTCGGCTC
CCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis