Browse Element(s) Details


OsAffx.20370.1.S1_at

Description gb:NM_196368.1
DB_XREF= gi:37534095
TID=OsAffx.20370.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0050N08.9), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2599011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g1642011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25930Os.46333.1.S1_at2/1110+13106703..13108209Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25930Os.46333.1.S1_x_at2/1110+13106703..13108209Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25940NANA10+13112221..13112758hypothetical protein
LOC_Os10g25950Os.46333.1.S1_x_at3/1110+13117793..13119521Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25950Os.46333.1.S1_at1/1110+13117793..13119521Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25960OsAffx.10637.1.S1_s_at11/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960OsAffx.10637.3.S1_s_at9/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960OsAffx.10637.4.S1_s_at7/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.32056.1.S1_at11/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.32056.1.S1_x_at10/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.30536.1.S1_x_at1/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25990OsAffx.20370.1.S1_at11/1110+13131377..13132303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g26000OsAffx.8150.1.S1_at11/1110+13132783..13133229hypothetical protein
LOC_Os10g26010Os.46333.1.S1_at11/1110+13136168..13137937Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26010Os.46333.1.S1_x_at11/1110+13136168..13137937Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26020NANA10+13141522..13141989retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26030OsAffx.20369.1.S1_at11/1110+13142778..13146554retrotransposon protein, putative, unclassified
LOC_Os10g26040Os.46012.2.S1_x_at9/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.46012.3.S1_x_at6/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.27088.1.A1_x_at3/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.45902.1.A1_x_at2/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040OsAffx.22094.1.S1_at1/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20370.1.S1_at--579--4072Chr03:9042186..9042210 (25 bp)
CGAGTGTCCAACGTCTCATGAAGCA
LOC_Os03g16420
OsAffx.20370.1.S1_at--861--10632Chr03:9042227..9042251 (25 bp)
TTCCGTGACGGAGAGAACGTCGGCG
LOC_Os03g16420
OsAffx.20370.1.S1_at--1011--4632Chr03:9042321..9042345 (25 bp)
GCGTCGTGAAGAAAGTTCTGCGCGT
LOC_Os03g16420
OsAffx.20370.1.S1_at--401--5352Chr03:9042328..9042352 (25 bp)
GAAGAAAGTTCTGCGCGTGGTCCCC
LOC_Os03g16420
OsAffx.20370.1.S1_at--640--952Chr03:9042447..9042471 (25 bp)
AGGACGCGGACGCTGAGGATCAAGC
LOC_Os03g16420
OsAffx.20370.1.S1_at--987--1832Chr03:9042456..9042480 (25 bp)
ACGCTGAGGATCAAGCGGCGTCTAG
LOC_Os03g16420
OsAffx.20370.1.S1_at--879--372Chr03:9042465..9042489 (25 bp)
ATCAAGCGGCGTCTAGCGCGGAGCA
LOC_Os03g16420
OsAffx.20370.1.S1_at--849--3892Chr03:9042492..9042516 (25 bp)
CTGGGCAACTCCTGCTCACGGAGGA
LOC_Os03g16420
OsAffx.20370.1.S1_at--687--8232Chr03:9042495..9042519 (25 bp)
GGCAACTCCTGCTCACGGAGGAGCA
LOC_Os03g16420
OsAffx.20370.1.S1_at--629--2552Chr03:9042498..9042522 (25 bp)
AACTCCTGCTCACGGAGGAGCAATG
LOC_Os03g16420
OsAffx.20370.1.S1_at--388--9272Chr03:9042501..9042525 (25 bp)
TCCTGCTCACGGAGGAGCAATGGGA
LOC_Os03g16420
Target Sequence 
CGAGTGTCCAACGTCTCATGAAGCAGNTNGAGAACATGNCGTTCCGTGACGGAGAGAACGTCGGCGACTTCGCNATGCGC
ATCAACGGNCTCGTCGCCAGCCTGCGCGAGCTTGGTGAGGAGATGGAGGACAGNCGCGTCGTGAAGAAAGTTCTGCGCGT
GGTCCCCAAGAGNCTGAAGCAAGTCGCGGTGGCGATTGAGATGCTCGCCGANATCGACACCATGNAGATCGAGGAGCTCG
TCGGCCGGTTGCAGGTGGCNGAGGACGCGGACGCTGAGGATCAAGCGGCGTCTAGCGCGGAGCANGCTGGGCAACTCCTG
CTCACGGAGGAGCAATGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis