Browse Element(s) Details


Os.46333.1.S1_at

Description gb:NM_196370.1
DB_XREF= gi:37534099
TID=Os.46333.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46333 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cystathionine gamma synthase (O-succinylhomoserine (thiol)-lyase) (OSJNBa0050N08.11), mRNA.
PROD=putative cystathionine gamma synthase(O-succinylhomoserine (thiol)-lyase)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2601011/11Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g259302/11Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g259501/11Cys/Met metabolism PLP-dependent enzyme family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25940NANA10+13112221..13112758hypothetical protein
LOC_Os10g25950Os.46333.1.S1_x_at3/1110+13117793..13119521Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25950Os.46333.1.S1_at1/1110+13117793..13119521Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25960OsAffx.10637.1.S1_s_at11/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960OsAffx.10637.3.S1_s_at9/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25960OsAffx.10637.4.S1_s_at7/1110+13120714..13124400transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.32056.1.S1_at11/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.32056.1.S1_x_at10/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.30536.1.S1_x_at1/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25990OsAffx.20370.1.S1_at11/1110+13131377..13132303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g26000OsAffx.8150.1.S1_at11/1110+13132783..13133229hypothetical protein
LOC_Os10g26010Os.46333.1.S1_at11/1110+13136168..13137937Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26010Os.46333.1.S1_x_at11/1110+13136168..13137937Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26020NANA10+13141522..13141989retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26030OsAffx.20369.1.S1_at11/1110+13142778..13146554retrotransposon protein, putative, unclassified
LOC_Os10g26040Os.46012.2.S1_x_at9/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.46012.3.S1_x_at6/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.27088.1.A1_x_at3/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.45902.1.A1_x_at2/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040OsAffx.22094.1.S1_at1/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26050Os.26721.1.S1_at11/1110+13161357..13165343methionyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009086biological_processmethionine biosynthesis
GO:0019279biological_processmethionine biosynthesis from L-homoserine via cystathione
GO:0009507cellular_componentchloroplast
GO:0003962molecular_functioncystathionine gamma-synthase activity
GO:0004121molecular_functioncystathionine beta-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46333.1.S1_at--1047--9132Chr10:13137203..13137227 (25 bp)
TGCGTCAGCGGCTCGGAGGCCCTCA
LOC_Os10g26010
Os.46333.1.S1_at--76--4811Chr10:13137213..13137237 (25 bp)
GCTCGGAGGCCCTCATCTCGCGGAT
LOC_Os10g26010
Os.46333.1.S1_at--625--9611Chr10:13137225..13137249 (25 bp)
TCATCTCGCGGATCCGCGCGTGGCA
LOC_Os10g26010
Os.46333.1.S1_at--428--6591Chr10:13137394..13137418 (25 bp)
GATTGAAGACGATTGCGCTGCGGGT
LOC_Os10g26010
Os.46333.1.S1_at--1039--1653Chr10:13137481..13137505 (25 bp)
AGCGCGTCTACTACCCTGGGCTGGA
LOC_Os10g26010
Os.46333.1.S1_at--1158--9951Chr10:13137492..13137516 (25 bp)
TACCCTGGGCTGGAGAGCAGCCTGT
LOC_Os10g26010
Os.46333.1.S1_at--1056--2051Chr10:13137583..13137607 (25 bp)
ACTTGCGCGGCGTGATGAGGTTCGT
LOC_Os10g26010
Os.46333.1.S1_at--176--9431Chr10:13137604..13137628 (25 bp)
TCGTGGATGCGCTGGAGTTGCCTCT
LOC_Os10g26010
Os.46333.1.S1_at--58--8051Chr10:13137617..13137641 (25 bp)
GGAGTTGCCTCTCATCGCAACGTCG
LOC_Os10g26010
Os.46333.1.S1_at--955--9351Chr10:13137631..13137655 (25 bp)
TCGCAACGTCGCTCGGTGGATGTGA
LOC_Os10g26010
Os.46333.1.S1_at--840--9431Chr10:13137643..13137667 (25 bp)
TCGGTGGATGTGAAAGCCTTGTGCA
LOC_Os10g26010
Target Sequence 
TGCGTCAGCGGCTCGGAGGCCCTCATCTCGCGGATCCGCGCGTGGCACCACGACCTCGGCGGCGCCATCAGTCCGAACGC
GGCGTACATGATCATTCGGGGATTGAAGACGATTGCGCTGCGGGTGGAGGCGCAGAACAGGACGGCGCTGCGGATGGCGC
GGCTGCTGGAGAAGCACCCCAAGATCGAGCGCGTCTACTACCCTGGGCTGGAGAGCAGCCTGTGGCACGGCGTCGCGACG
AGGCAGATGGCCGGCGCCGGCGGCGTGGTCAGCTTCGATGTGGCGTCGGACTTGCGCGGCGTGATGAGGTTCGTGGATGC
GCTGGAGTTGCCTCTCATCGCAACGTCGCTCGGTGGATGTGAAAGCCTTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis