Browse Element(s) Details


Os.38256.1.S1_at

Description gb:AK066433.1
DB_XREF= gi:32976451
TID=Os.38256.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059F23, full insert sequence.
FL= gb:AK066433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1646011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16400Os.5247.1.S1_at11/113+9026627..9030507expressed protein
LOC_Os03g16400Os.799.2.S1_x_at4/113+9026627..9030507expressed protein
LOC_Os03g16410NANA3+9030906..9031373hypothetical protein
LOC_Os03g16420OsAffx.20370.1.S1_at11/113+9041840..9042763retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g16430Os.27006.1.S1_at11/113+9043907..9047100Sigma-70 region 3 family protein, expressed
LOC_Os03g16440Os.12583.1.S1_at11/113+9047443..9053002chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os03g16450Os.12583.3.S1_x_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16450Os.12583.2.S1_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16460Os.38256.1.S1_at11/113+9055024..9058460HEAT repeat family protein, expressed
LOC_Os03g16470Os.27598.1.S1_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.3.S1_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.1.S1_a_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.2.S1_at10/113+9058653..9060595expressed protein
LOC_Os03g16480Os.27651.1.S1_at11/113+9063531..9065005Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g16490NANA3+9068830..9071493hypothetical protein
LOC_Os03g16500Os.32109.1.S1_at11/113+9075454..9084043Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38256.1.S1_at--467--671Chr03:9055597..9055621 (25 bp)
ATGAACCGTCCACACTTCATGTGGA
LOC_Os03g16460
Os.38256.1.S1_at--1128--8191Chr03:9055548..9055572 (25 bp)
GGAATGTTTCGAACAACCTCCTGAC
LOC_Os03g16460
Os.38256.1.S1_at--1097--2611Chr03:9055534..9055558 (25 bp)
AACCTCCTGACGTGGCTGGTAGATT
LOC_Os03g16460
Os.38256.1.S1_at--9--8591Chr03:9055518..9055542 (25 bp)
TGGTAGATTCTTCGAGCCTCTGCGG
LOC_Os03g16460
Os.38256.1.S1_at--854--711Chr03:9055427..9055451 (25 bp)
ATGATGCTGCTTTTAGGTCCATCCC
LOC_Os03g16460
Os.38256.1.S1_at--770--7771Chr03:9055412..9055436 (25 bp)
GGTCCATCCCCAGGCAGTAGATCAA
LOC_Os03g16460
Os.38256.1.S1_at--1002--1391Chr03:9055339..9055363 (25 bp)
AGACTGGGAGTCTGCTGTCCTCTTA
LOC_Os03g16460
Os.38256.1.S1_at--501--9111Chr03:9055327..9055351 (25 bp)
TGCTGTCCTCTTATGTACATTGTGC
LOC_Os03g16460
Os.38256.1.S1_at--12--7031Chr03:9055313..9055337 (25 bp)
GTACATTGTGCAGGGCTAGTGCTAT
LOC_Os03g16460
Os.38256.1.S1_at--962--6811Chr03:9055178..9055202 (25 bp)
GTTTAGCAGTGTGTAGTCTCATTAT
LOC_Os03g16460
Os.38256.1.S1_at--518--4531Chr03:9055079..9055103 (25 bp)
GCGCCCAAAATAGAAGTCACCCTGT
LOC_Os03g16460
Target Sequence 
ATGAACCGTCCACACTTCATGTGGAAGGTCTTCTTGTTTTGCCTGGGGAGGAATGTTTCGAACAACCTCCTGACGTGGCT
GGTAGATTCTTCGAGCCTCTGCGGCGAAGTTCGGCAAGGAGAGCACCTTNTAATGAGAGATCAGATCCAGGAGATGGAAC
TGGGGGAGGAATGATGCTGCTTTTAGGTCCATCCCCAGGCAGTAGATCAAACTCGGGGAGTAATTGATCACTCTGGGATG
TGAATTACATGGAAAAGGAGACTGGGAGTCTGCTGTCCTCTTATGTACATTGTGCAGGGCTAGTGCTATAGAGTGTTGCT
GTTAAGGGGCTAGTAAAAAGTAAATAAATAATTTCCCAGTTTCGAAGAAATGTAAGTGGAAAATATGTGTGATGTTCAGC
AGTGTATAATATGTCTGATGTTTAGCAGTGTGTAGTCTCATTATACAATAGAAATGCGAAATACTTTTGTGTAAGAGACC
TAAACGATGGTGGGGTGATAGTATGAAATGTAAATGTAGCGCCCAAAATAGAAGTCACCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis