Browse Element(s) Details


Os.27598.2.S1_at

Description gb:AK109239.1
DB_XREF= gi:32994448
TID=Os.27598.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1261C08.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F11, full insert sequence.
FL= gb:AK109239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1647010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16420OsAffx.20370.1.S1_at11/113+9041840..9042763retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g16430Os.27006.1.S1_at11/113+9043907..9047100Sigma-70 region 3 family protein, expressed
LOC_Os03g16440Os.12583.1.S1_at11/113+9047443..9053002chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os03g16450Os.12583.3.S1_x_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16450Os.12583.2.S1_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16460Os.38256.1.S1_at11/113+9055024..9058460HEAT repeat family protein, expressed
LOC_Os03g16470Os.27598.1.S1_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.3.S1_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.1.S1_a_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.2.S1_at10/113+9058653..9060595expressed protein
LOC_Os03g16480Os.27651.1.S1_at11/113+9063531..9065005Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g16490NANA3+9068830..9071493hypothetical protein
LOC_Os03g16500Os.32109.1.S1_at11/113+9075454..9084043Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27598.2.S1_at--1086--6571Chr03:9059293..9059317 (25 bp)
GATTGCTGGTACAGCACTTCGTCTT
LOC_Os03g16470
Os.27598.2.S1_at--497--7131NONE
GTCTTCCTTTTCCAGTGTTCAACGA
NONE
Os.27598.2.S1_at--486--6751Chr03:9060088..9060112 (25 bp)
GTTCAACGAGCTGTATCAATCTGGA
LOC_Os03g16470
Os.27598.2.S1_at--705--5731Chr03:9060229..9060253 (25 bp)
GACTGGTTAGGCATTGACTTTTGTA
LOC_Os03g16470
Os.27598.2.S1_at--1148--7371Chr03:9060254..9060278 (25 bp)
GTGAGCCTTGAAAGCCACAGCTAGA
LOC_Os03g16470
Os.27598.2.S1_at--1002--111Chr03:9060289..9060313 (25 bp)
ATTCTTTGATTGCTATCCTTCTGGA
LOC_Os03g16470
Os.27598.2.S1_at--1022--1811Chr03:9060356..9060380 (25 bp)
ACGTTATTGACGTCTATGTTCCATA
LOC_Os03g16470
Os.27598.2.S1_at--238--8211Chr03:9060394..9060418 (25 bp)
GGAATAAACCCACTTCTGTATGCTG
LOC_Os03g16470
Os.27598.2.S1_at--165--6771Chr03:9060433..9060457 (25 bp)
GTTACATATGTAGCGTACTCCCTCA
LOC_Os03g16470
Os.27598.2.S1_at--1071--1511Chr03:9060444..9060468 (25 bp)
AGCGTACTCCCTCATTATACTAGGA
LOC_Os03g16470
Os.27598.2.S1_at--1145--6911Chr03:9060557..9060581 (25 bp)
GTATGGAGCATCACAGGTCTTAAGT
LOC_Os03g16470
Target Sequence 
GATTGCTGGTACAGCACTTCGTCTTCCTTTTCCAGTGTTCAACGAGCTGTATCAATCTGGATACTGTTAAAACTGAAGCT
ATGCATCAGATCAGCTTGAAATTGTTGAATTATGCATGTTGCTTTTGAAGCTGGATGGTTGTTATATATTATTGCTCCTG
TGTTTAGGTTGGATTTGGACTGGTTAGGCATTGACTTTTGTAGTGAGCCTTGAAAGCCACAGCTAGATCTATGTTTTATT
CTTTGATTGCTATCCTTCTGGAAGGATGAAAAAAAGGTGTTCTTTCTTTTGTGAAATGTGCCATACGTTATTGACGTCTA
TGTTCCATAAGCTAAGACCCTAGGAATAAACCCACTTCTGTATGCTGGAGTATGAATACCTGTTACATATGTAGCGTACT
CCCTCATTATACTAGGATTGGTCATATCCCATCTTAAGTTAAATTATTTTGGGACGAAGGGAGTAGTGTTAAAAATGTTT
GTATGAAGTATAAATGATTGATACAGTATGGAGCATCACAGGTCTTAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27598.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis