Browse Element(s) Details


Os.32109.1.S1_at

Description gb:AK103225.1
DB_XREF= gi:32988434
TID=Os.32109.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1261C08.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123A19, full insert sequence.
FL= gb:AK103225.1 gb:AK101206.1 gb:AK105994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1650011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16440Os.12583.1.S1_at11/113+9047443..9053002chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os03g16450Os.12583.3.S1_x_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16450Os.12583.2.S1_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16460Os.38256.1.S1_at11/113+9055024..9058460HEAT repeat family protein, expressed
LOC_Os03g16470Os.27598.1.S1_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.3.S1_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.1.S1_a_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.2.S1_at10/113+9058653..9060595expressed protein
LOC_Os03g16480Os.27651.1.S1_at11/113+9063531..9065005Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g16490NANA3+9068830..9071493hypothetical protein
LOC_Os03g16500Os.32109.1.S1_at11/113+9075454..9084043Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g16530NANA3+9086606..9094817retrotransposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.4.S1_s_at11/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.1.S1_x_at5/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16550OsAffx.25108.5.S1_x_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16550OsAffx.25108.5.S1_at11/113+9102877..9103197hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0012501biological_processprogrammed cell death
GO:0005783cellular_componentendoplasmic reticulum
GO:0004190molecular_functionaspartic-type endopeptidase activity
GO:0004194molecular_functionpepsin A activity
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32109.1.S1_at--59--8071Chr03:9076978..9077002 (25 bp)
GGAGAAGCTCCTGTACATGGTGCCA
LOC_Os03g16500
Os.32109.1.S1_at--867--9271Chr03:9076986..9077010 (25 bp)
TCCTGTACATGGTGCCAGGCGAGCG
LOC_Os03g16500
Os.32109.1.S1_at--106--7471Chr03:9077036..9077060 (25 bp)
GTGTGGTGCCTGACGTTCGGCAACT
LOC_Os03g16500
Os.32109.1.S1_at--239--8231Chr03:9077054..9077078 (25 bp)
GGCAACTCGGACATGGCCGGCATGT
LOC_Os03g16500
Os.32109.1.S1_at--957--3911Chr03:9077197..9077221 (25 bp)
CGGCGCGTAGGCTTTACAGTACTAA
LOC_Os03g16500
Os.32109.1.S1_at--285--7011Chr03:9077215..9077239 (25 bp)
GTACTAATCGATGCGTCGTCCATGG
LOC_Os03g16500
Os.32109.1.S1_at--713--9331Chr03:9077247..9077271 (25 bp)
TCGCCGTGGCCAAGTAAGAGTGTAG
LOC_Os03g16500
Os.32109.1.S1_at--62--892Chr03:9077272..9077296 (25 bp)
AGGCCTAGTATTAGAGATGGTCTCT
LOC_Os03g16500
Os.32109.1.S1_at--725--8691Chr03:9077309..9077333 (25 bp)
TGTGCTTCACATCACTGCTGGCGTG
LOC_Os03g16500
Os.32109.1.S1_at--117--391Chr03:9077319..9077343 (25 bp)
ATCACTGCTGGCGTGTGTAGTAGTG
LOC_Os03g16500
Os.32109.1.S1_at--483--2891Chr03:9077357..9077381 (25 bp)
AAGGGTGTGTTTATGTCGAAACTAG
LOC_Os03g16500
Target Sequence 
GGAGAAGCTCCTGTACATGGTGCCAGGCGAGCGGCGCGGCGAGGGGGGCGCGGAGGCGGTGTGGTGCCTGACGTTCGGCA
ACTCGGACATGGCCGGCATGTCGGCGTACGTGATCGGGCACCACCACCAGCAGAACGTGTGGGTGGAGTACGACCTCCAG
AACGGCCGCGTCGGCTTCGCGCCAGCGCGCTGCGACCTTGCCACCCAGCGCCTCGGCGCCGGCGCGTAGGCTTTACAGTA
CTAATCGATGCGTCGTCCATGGCGAGAACTCGCCGTGGCCAAGTAAGAGTGTAGAGGCCTAGTATTAGAGATGGTCTCTC
CGNTCACCTGCTGTGCTTCACATCACTGCTGGCGTGTGTAGTAGTGTACGGAGTAGTTAAAGGGTGTGTTTATGTCGAAA
CTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis