Browse Element(s) Details


OsAffx.25108.5.S1_x_at

Description tigr:9631.m01614
TID=OsAffx.25108.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1655011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16500Os.32109.1.S1_at11/113+9075454..9084043Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g16530NANA3+9086606..9094817retrotransposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.4.S1_s_at11/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.1.S1_x_at5/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16550OsAffx.25108.5.S1_x_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16550OsAffx.25108.5.S1_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16560OsAffx.25110.1.S1_at11/113+9110162..9110605hypothetical protein
LOC_Os03g16570Os.15312.1.S1_at11/113+9111847..9115749zinc finger family protein, putative, expressed
LOC_Os03g16580Os.53016.1.S1_at10/113+9117602..9122615expressed protein
LOC_Os03g16580OsAffx.13881.1.S1_at2/113+9117602..9122615expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25108.5.S1_x_at--541--1971Chr03:9103111..9103135 (25 bp)
ACTGCCAAGGAAGACTGCTTCGACC
LOC_Os03g16550
OsAffx.25108.5.S1_x_at--58--2931Chr03:9103105..9103129 (25 bp)
AAGGAAGACTGCTTCGACCTTGCCC
LOC_Os03g16550
OsAffx.25108.5.S1_x_at--506--1832Chr01:6294996..6295017 (22 bp)
ACGCGAGAGCTTCCAGGCGTTGTCA
NONE
OsAffx.25108.5.S1_x_at--625--4612Chr01:6294998..6295017 (20 bp)
GCGAGAGCTTCCAGGCGTTGTCATC
NONE
OsAffx.25108.5.S1_x_at--572--1551Chr03:9103040..9103064 (25 bp)
AGCTTCCAGGCGTTGTCATCCTCGA
LOC_Os03g16550
OsAffx.25108.5.S1_x_at--124--10671Chr03:9103037..9103061 (25 bp)
TTCCAGGCGTTGTCATCCTCGACAA
LOC_Os03g16550
OsAffx.25108.5.S1_x_at--779--4631Chr03:9103031..9103055 (25 bp)
GCGTTGTCATCCTCGACAACGACGG
LOC_Os03g16550
OsAffx.25108.5.S1_x_at--817--8012Chr01:6295092..6295116 (25 bp)
GGAGGAATCGCAAGAGCCGAACAAA
NONE
OsAffx.25108.5.S1_x_at--734--8193Chr04:5611585..5611609 (25 bp)
GGAATCGCAAGAGCCGAACAAAAAC
NONE
OsAffx.25108.5.S1_x_at--852--5152Chr04:5611591..5611615 (25 bp)
GCAAGAGCCGAACAAAAACGGGAGA
NONE
OsAffx.25108.5.S1_x_at--851--5572Chr04:5611614..5611638 (25 bp)
GAAAGGGCGACCGTTGCTGCCAAGC
NONE
Target Sequence 
ACTGCCAAGGAAGACTGCTTCGACCTTGCCCTCCTCTCCATCCCTCGGCCCTATGTCCTCCCCCACGCGAGAGCTTCCAG
GCGTTGTCATCCTCGACAACGACGGCTTCCACAGCGGCGGCGGCGGCGCCAAGCTCTTCACCACCACCCACGTCGGAGGA
ATCGCAAGAGCCGAACAAAAACGGGAGAAAGGGCGACCGTTGCTGCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25108.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis