Browse Element(s) Details


Os.15312.1.S1_at

Description gb:AK060183.1
DB_XREF= gi:32970201
TID=Os.15312.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023124E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-C07, full insert sequence.
FL= gb:AK071865.1 gb:AK060183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1657011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16530NANA3+9086606..9094817retrotransposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.4.S1_s_at11/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.1.S1_x_at5/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16550OsAffx.25108.5.S1_x_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16550OsAffx.25108.5.S1_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16560OsAffx.25110.1.S1_at11/113+9110162..9110605hypothetical protein
LOC_Os03g16570Os.15312.1.S1_at11/113+9111847..9115749zinc finger family protein, putative, expressed
LOC_Os03g16580Os.53016.1.S1_at10/113+9117602..9122615expressed protein
LOC_Os03g16580OsAffx.13881.1.S1_at2/113+9117602..9122615expressed protein
LOC_Os03g16600Os.51616.1.S1_at1/113+9136640..9136936expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008233molecular_functionpeptidase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15312.1.S1_at--1068--2411Chr03:9115162..9115186 (25 bp)
AAAACGTTCACTTCTCTGTGATGTT
LOC_Os03g16570
Os.15312.1.S1_at--508--8911Chr03:9115217..9115241 (25 bp)
TGACCTGTACCCTGTTCAGTATGAA
LOC_Os03g16570
Os.15312.1.S1_at--799--5471Chr03:9115239..9115263 (25 bp)
GAACTCACATACAATCCTTTTTACT
LOC_Os03g16570
Os.15312.1.S1_at--1053--4371Chr03:9115331..9115355 (25 bp)
CCAAGAGTAGTGGTCTGGTCTCTAT
LOC_Os03g16570
Os.15312.1.S1_at--132--1572Chr07:26011836..26011930 (24 bp)
AGCTATGCTTCTATGAGTTTACTAA
NONE
Os.15312.1.S1_at--540--2991Chr03:9115527..9115551 (25 bp)
AATGTAGCCTCTATACTACGCGCAC
LOC_Os03g16570
Os.15312.1.S1_at--1156--2651Chr03:9115562..9115586 (25 bp)
AAGCCGAGCAGCGATGCTGTGCACT
LOC_Os03g16570
Os.15312.1.S1_at--700--5791Chr03:9115610..9115634 (25 bp)
GACGCTTCAGCCTGGGCCTTGGATG
LOC_Os03g16570
Os.15312.1.S1_at--922--6231Chr03:9115631..9115655 (25 bp)
GATGGCAATTAGTCTGGGTTTCTTT
LOC_Os03g16570
Os.15312.1.S1_at--1008--3091Chr03:9115689..9115713 (25 bp)
AATATCCCGTATATGAACATCTGGG
LOC_Os03g16570
Os.15312.1.S1_at--958--5571Chr03:9115725..9115749 (25 bp)
GAAATGGCGATACTTTATCTCGGTG
LOC_Os03g16570
Target Sequence 
AAAACGTTCACTTCTCTGTGATGTTTATGCATCAAAAGGTTGTGATATTTTTGGTTGACCTGTACCCTGTTCAGTATGAA
CTCACATACAATCCTTTTTACTCTGTTTCCGTGGGGAAATTGGCGTATTATGGGTGTTTAAGGCTGAAGATCAGTAGAGG
ATTTAAGATCCAAGAGTAGTGGTCTGGTCTCTATTNAGTCTTAAGTAAAAATGATCTTAACTGTTAGTATTATCACAAGT
AAAAAGGAGAAACTGATTTATGAGTNCTACCATCATTATATTTTTTTCCTTATTTAGGGCAATCAAGTTTTTGACTATTT
TAAAGACTCTTAACTACTAATTTAGCTATGCTTCTATGAGTTTACTAATGTAGCCTCTATACTACGCGCACGCCAGCGTC
CAAGCCGAGCAGCGATGCTGTGCACTCCCACTCGACGCGGTCGTGCTGCGACGCTTCAGCCTGGGCCTTGGATGGCAATT
AGTCTGGGTTTCTTTTATGTTTCGACTGAATCATTTGTTTTGAACTCAAATATCCCGTATATGAACATCTGGGAAAAGGA
TAAAGAAATGGCGATACTTTATCTCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis