Browse Element(s) Details


OsAffx.25110.1.S1_at

Description tigr:9631.m01615
TID=OsAffx.25110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1656011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16530NANA3+9086606..9094817retrotransposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.4.S1_s_at11/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.1.S1_x_at5/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16550OsAffx.25108.5.S1_x_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16550OsAffx.25108.5.S1_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16560OsAffx.25110.1.S1_at11/113+9110162..9110605hypothetical protein
LOC_Os03g16570Os.15312.1.S1_at11/113+9111847..9115749zinc finger family protein, putative, expressed
LOC_Os03g16580Os.53016.1.S1_at10/113+9117602..9122615expressed protein
LOC_Os03g16580OsAffx.13881.1.S1_at2/113+9117602..9122615expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25110.1.S1_at--274--5411Chr03:9110535..9110559 (25 bp)
GAAGCTCCCCATGGCTAGGACAGGA
LOC_Os03g16560
OsAffx.25110.1.S1_at--787--8471Chr03:9110524..9110548 (25 bp)
TGGCTAGGACAGGATCTGGCCATAG
LOC_Os03g16560
OsAffx.25110.1.S1_at--952--4771Chr03:9110489..9110513 (25 bp)
GCTCCACGAAGGTGGGTTTTTTCAG
LOC_Os03g16560
OsAffx.25110.1.S1_at--419--8611Chr03:9110477..9110501 (25 bp)
TGGGTTTTTTCAGCCGGCTGGGAAG
LOC_Os03g16560
OsAffx.25110.1.S1_at--1033--4691Chr03:9110461..9110485 (25 bp)
GCTGGGAAGAAGAGACGCCTCCGCC
LOC_Os03g16560
OsAffx.25110.1.S1_at--401--3411Chr03:9110401..9110425 (25 bp)
CAGCAGCTGATGCACGGTCCACAAG
LOC_Os03g16560
OsAffx.25110.1.S1_at--846--8851Chr03:9110394..9110418 (25 bp)
TGATGCACGGTCCACAAGCCGCAGC
LOC_Os03g16560
OsAffx.25110.1.S1_at--34--9431Chr03:9110364..9110388 (25 bp)
TCGTGCAGGTCCTCGTGCTGCGATC
LOC_Os03g16560
OsAffx.25110.1.S1_at--548--1031Chr03:9110358..9110382 (25 bp)
AGGTCCTCGTGCTGCGATCGCTGCC
LOC_Os03g16560
OsAffx.25110.1.S1_at--614--4971Chr03:9110257..9110281 (25 bp)
GCATCTAGCACAGATCCGACCAAGG
LOC_Os03g16560
OsAffx.25110.1.S1_at--618--1291Chr03:9110246..9110270 (25 bp)
AGATCCGACCAAGGAAGGGCCGGAT
LOC_Os03g16560
Target Sequence 
GAAGCTCCCCATGGCTAGGACAGGATCTGGCCATAGGAGGGGAGGAGCTCCACGAAGGTGGGTTTTTTCAGCCGGCTGGG
AAGAAGAGACGCCTCCGCCGCCACCCGCTTCCCCGTGCACAGGCCAGAGAGAGGCAGCAGCTGATGCACGGTCCACAAGC
CGCAGCCACCGTCGTGCAGGTCCTCGTGCTGCGATCGCTGCCGCCTCCGCGCGGCCCTCATGACGCCGCCGCCGCCGCCG
TGCGGCCCTCGCGCCCGCCGCCTCCGCGGCCGACCCACGCATCTAGCACAGATCCGACCAAGGAAGGGCCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis