Browse Element(s) Details


Os.53016.1.S1_at

Description gb:AK070454.1
DB_XREF= gi:32980478
TID=Os.53016.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050K07, full insert sequence.
FL= gb:AK070454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1658010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16530NANA3+9086606..9094817retrotransposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.4.S1_s_at11/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.1.S1_x_at5/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16550OsAffx.25108.5.S1_x_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16550OsAffx.25108.5.S1_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16560OsAffx.25110.1.S1_at11/113+9110162..9110605hypothetical protein
LOC_Os03g16570Os.15312.1.S1_at11/113+9111847..9115749zinc finger family protein, putative, expressed
LOC_Os03g16580Os.53016.1.S1_at10/113+9117602..9122615expressed protein
LOC_Os03g16580OsAffx.13881.1.S1_at2/113+9117602..9122615expressed protein
LOC_Os03g16600Os.51616.1.S1_at1/113+9136640..9136936expressed protein
LOC_Os03g16610Os.5638.1.S1_at11/113+9146670..9149377laccase, putative, expressed
LOC_Os03g16610OsAffx.21744.2.S1_x_at1/113+9146670..9149377laccase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53016.1.S1_at--25--932Chr03:9121879..9121903 (25 bp)
AGGCATTTTCATCCAGCAGCTCAAG
LOC_Os03g16580
Os.53016.1.S1_at--136--3911Chr03:9121983..9122007 (25 bp)
CTGGAGTATGATCACCCTGGTCTAA
LOC_Os03g16580
Os.53016.1.S1_at--440--7811Chr03:9122001..9122025 (25 bp)
GGTCTAATGCTGCTACCATATGATG
LOC_Os03g16580
Os.53016.1.S1_at--270--831Chr03:9122104..9122128 (25 bp)
ATGGTTCTGCTGCTGGTGTCATAGA
LOC_Os03g16580
Os.53016.1.S1_at--265--8871Chr03:9122374..9122398 (25 bp)
TGATGTCATAAATCTCCGCTCTGTT
LOC_Os03g16580
Os.53016.1.S1_at--961--6751Chr03:9122396..9122420 (25 bp)
GTTCAACATCGGAAGACGCTTTGCT
LOC_Os03g16580
Os.53016.1.S1_at--1129--10271Chr03:9122415..9122439 (25 bp)
TTTGCTCCCTGCAGTCAGTGTGTGA
LOC_Os03g16580
Os.53016.1.S1_at--806--7451Chr03:9122434..9122458 (25 bp)
GTGTGATTTGAGCTTAGCCCTGCAC
LOC_Os03g16580
Os.53016.1.S1_at--177--4871Chr03:9122489..9122513 (25 bp)
GCTAGGTGCCTATTTTTGTACATCT
LOC_Os03g16580
Os.53016.1.S1_at--1037--10111Chr03:9122532..9122556 (25 bp)
TATGTCTTCTGAGTTCTGAACGGAC
LOC_Os03g16580
Os.53016.1.S1_at--667--9771NONE
TAATGTACTCCTCTGAAGTCTGACC
NONE
Target Sequence 
AGGCATTTTCATCCAGCAGCTCAAGCAACAACATTTCATCTGATGCCTTCACTTCTTCCCGTAGTAATGGCACCAAAGAT
ACTGACAGTTGGGATATGCAGCACCTGGAGTATGATCACCCTGGTCTAATGCTGCTACCATATGATGATGACATAGAGGA
GGCATACGATGTACTAGGACAATATGATGTTGTAATGAAAAATGATCTAGCGAGTGGTGATGTTGATGGTTCTGCTGCTG
GTGTCATAGATGAGAAGCTTTACTCGAATGGAATAGAAGATTTACTCATATTGCCAAGAGGCCAGAATAGCATTCATGAC
GAGAAGAATAAGCTGACGATCGATCAAGAGTTTGAGCAGTATTTTACAAGGCTCATGCTTTAGCATTGATGATGTCATAA
ATCTCCGCTCTGTTCAACATCGGAAGACGCTTTGCTCCCTGCAGTCAGTGTGTGATTTGAGCTTAGCCCTGCACGAGCGA
ATGCGAGTGTTAGCTGCTATAGGAGCTAGGTGCCTATTTTTGTACATCTTCTTCACTGCTATGTATATATGTCTTCTGAG
TTCTGAACGGACTAATGTACTCCTCTGAAGTCTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis