Browse Element(s) Details


OsAffx.13881.1.S1_at

Description tigr:9632.m01836
TID=OsAffx.13881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2013011/11hypothetical protein
LOC_Os03g165802/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20090Os.46053.2.S1_x_at4/114+11165049..11168028transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20100Os.47463.1.S1_x_at6/114+11170682..11174381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20100Os.14491.2.S1_x_at4/114+11170682..11174381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20110NANA4+11183179..11183421retrotransposon protein, putative, unclassified
LOC_Os04g20120OsAffx.8864.1.S1_at8/114+11183974..11188313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g20130OsAffx.13881.1.S1_at11/114+11190595..11191308hypothetical protein
LOC_Os04g20140NANA4+11194506..11197195retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g20150OsAffx.13882.1.S1_at9/114+11198453..11200211hypothetical protein
LOC_Os04g20150Os.54523.1.S1_at2/114+11198453..11200211hypothetical protein
LOC_Os04g20150OsAffx.22629.1.S1_at1/114+11198453..11200211hypothetical protein
LOC_Os04g20164Os.11835.4.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g20164Os.11835.3.S1_x_at11/114+11211740..11219275Copper amine oxidase, enzyme domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13881.1.S1_at--317--4991Chr04:11190626..11190650 (25 bp)
GCATGAAGGCGCTAGATCAGTTTGA
LOC_Os04g20130
OsAffx.13881.1.S1_at--317--1213Chr04:11190644..11190668 (25 bp)
AGTTTGAAGTCAATGCTGTCTCCGG
LOC_Os04g20130
OsAffx.13881.1.S1_at--512--70710Chr07:16607042..16607061 (20 bp)
GTCAATGCTGTCTCCGGAGGCCGAA
NONE
OsAffx.13881.1.S1_at--894--39520Chr12:14566737..14566761 (25 bp)
CGGAGGCCGAACTGGACTTGGACTT
NONE
OsAffx.13881.1.S1_at--745--36129Chr12:14566753..14566777 (25 bp)
CTTGGACTTGGAATTATCATTGGAA
NONE
OsAffx.13881.1.S1_at--650--415Chr08:21324349..21324489 (25 bp)
ATCATTGGAACTGGCCATCCTTGGA
NONE
OsAffx.13881.1.S1_at--899--8459Chr11:24007926..24007962 (25 bp)
TGGCCATCCTTGGAGGTATCACATC
NONE
OsAffx.13881.1.S1_at--611--10179Chr11:24007947..24007966 (20 bp)
TATCACATCGTGAAAAACATCCTCA
NONE
OsAffx.13881.1.S1_at--714--2418Chr11:24007954..24008096 (25 bp)
AAAAACATCCTCATATTCCTACAAA
NONE
OsAffx.13881.1.S1_at--763--10211Chr04:11190865..11191244 (25 bp)
TATTCCTACAAAAGACGGCGGCTAC
LOC_Os04g20130
OsAffx.13881.1.S1_at--2--2771Chr04:11191232..11191255 (24 bp)
AAGACGGCGGCTACCAAAGCAAATA
LOC_Os04g20130
Target Sequence 
GCATGAAGGCGCTAGATCAGTTTGAAGTCAATGCTGTCTCCGGAGGCCGAACTGGACTTGGACTTGGAATTATCATTGGA
ACTGGCCATCCTTGGAGGTATCACATCGTGAAAAACATCCTCATATTCCTACAAAAGACGGCGGCTACCAAAGCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis