Browse Element(s) Details


OsAffx.25108.4.S1_s_at

Description tigr:9629.m01125
TID=OsAffx.25108.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1654011/11transposon protein, putative, unclassified
LOC_Os04g1039011/11transposon protein, putative, unclassified
LOC_Os01g1168011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16500Os.32109.1.S1_at11/113+9075454..9084043Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g16530NANA3+9086606..9094817retrotransposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.4.S1_s_at11/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16540OsAffx.25108.1.S1_x_at5/113+9099622..9102327transposon protein, putative, unclassified
LOC_Os03g16550OsAffx.25108.5.S1_x_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16550OsAffx.25108.5.S1_at11/113+9102877..9103197hypothetical protein
LOC_Os03g16560OsAffx.25110.1.S1_at11/113+9110162..9110605hypothetical protein
LOC_Os03g16570Os.15312.1.S1_at11/113+9111847..9115749zinc finger family protein, putative, expressed
LOC_Os03g16580Os.53016.1.S1_at10/113+9117602..9122615expressed protein
LOC_Os03g16580OsAffx.13881.1.S1_at2/113+9117602..9122615expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25108.4.S1_s_at--217--1373Chr03:9101479..9101503 (25 bp)
AGAGCAGACATCTATTTGCAGCTGT
LOC_Os03g16540
OsAffx.25108.4.S1_s_at--451--5053Chr03:9101482..9101506 (25 bp)
GCAGACATCTATTTGCAGCTGTGGG
LOC_Os03g16540
OsAffx.25108.4.S1_s_at--964--10073Chr03:9101515..9101539 (25 bp)
TAGGATTGGAATATTGTGTGGGCAT
LOC_Os03g16540
OsAffx.25108.4.S1_s_at--14--7493Chr03:9101530..9101554 (25 bp)
GTGTGGGCATGCTCTAAAGGTTCTT
LOC_Os03g16540
OsAffx.25108.4.S1_s_at--925--8273Chr03:9101535..9101559 (25 bp)
GGCATGCTCTAAAGGTTCTTGATTT
LOC_Os03g16540
OsAffx.25108.4.S1_s_at--1049--1153Chr03:9101571..9101595 (25 bp)
AGTCACTTCCAGCACAATATATATT
LOC_Os03g16540
OsAffx.25108.4.S1_s_at--79--5453Chr03:9101662..9101686 (25 bp)
GAACCCAATGATGGAAGCTTCCCTT
LOC_Os03g16540
OsAffx.25108.4.S1_s_at--1037--8873Chr03:9101670..9101694 (25 bp)
TGATGGAAGCTTCCCTTCGCTACAA
LOC_Os03g16540
OsAffx.25108.4.S1_s_at--864--10613Chr03:9101685..9101709 (25 bp)
TTCGCTACAAATTTCTATCCCACAG
LOC_Os03g16540
OsAffx.25108.4.S1_s_at--286--2253Chr03:9101693..9101717 (25 bp)
AAATTTCTATCCCACAGGTTTCTCA
LOC_Os03g16540
OsAffx.25108.4.S1_s_at--342--9553Chr03:9101698..9101722 (25 bp)
TCTATCCCACAGGTTTCTCACTTTG
LOC_Os03g16540
Target Sequence 
AGAGCAGACATCTATTTGCAGCTGTGGGCAATTTAATAGGATTGGAATATTGTGTGGGCATGCTCTAAAGGTTCTTGATT
TGATGAACATCAAGTCACTTCCAGCACAATATATATTAAAGGGATGTACACGGGAAGCAAGGAGTGGAATAGTAACTGAC
AGCAAGGGAATAAATATAATTGAGAACCCAATGATGGAAGCTTCCCTTCGCTACAAATTTCTATCCCACAGGTTTCTCAC
TTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25108.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis