Browse Element(s) Details


Os.34878.1.S1_a_at

Description gb:AK069762.1
DB_XREF= gi:32979786
TID=Os.34878.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJA1364E02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027K22, full insert sequence.
FL= gb:AK069762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1623011/11Tropinone reductase homolog At1g07440, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16180NANA3+8904205..8905896retrotransposon protein, putative, unclassified
LOC_Os03g16190NANA3+8906767..8907291retrotransposon protein, putative, unclassified
LOC_Os03g16200NANA3+8910433..8910714hypothetical protein
LOC_Os03g16210Os.30077.1.S1_at11/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.2.S1_at8/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.3.S1_at5/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220OsAffx.3252.1.S1_at11/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220Os.16159.1.S1_at10/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230Os.34878.1.S1_a_at11/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230OsAffx.17694.1.S1_x_at1/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16250Os.22646.1.S1_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.22646.1.S1_x_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.21756.5.A1_x_at3/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.16205.1.S1_at2/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.26442.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.52979.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16260Os.43946.1.S1_at11/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260Os.43946.3.S1_x_at10/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260OsAffx.25423.2.S1_x_at6/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16270NANA3+8947963..8948547hypothetical protein
LOC_Os03g16280NANA3+8950820..8953624retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34878.1.S1_a_at--158--5431Chr03:8929888..8929912 (25 bp)
GAACCAATTCTGTTGCACCATGGTA
LOC_Os03g16230
Os.34878.1.S1_a_at--337--2931Chr03:8929559..8929583 (25 bp)
AAGGAAGGACTTCGCTGACAGCGTC
LOC_Os03g16230
Os.34878.1.S1_a_at--785--8951Chr03:8929544..8929568 (25 bp)
TGACAGCGTCGTGCGTCGAACAGCG
LOC_Os03g16230
Os.34878.1.S1_a_at--98--7451Chr03:8929492..8929516 (25 bp)
GTGTCATCGCTGGTCGCGTTCCTGT
LOC_Os03g16230
Os.34878.1.S1_a_at--910--8331Chr03:8929420..8929444 (25 bp)
GGCGGCATGACCATAAACGGACTGT
LOC_Os03g16230
Os.34878.1.S1_a_at--785--2571Chr03:8929405..8929429 (25 bp)
AACGGACTGTATCCAACTCAGGACT
LOC_Os03g16230
Os.34878.1.S1_a_at--236--1351Chr03:8929380..8929404 (25 bp)
AGACCGAATAGGCAAACCGTATGGC
LOC_Os03g16230
Os.34878.1.S1_a_at--306--2071Chr03:8929247..8929271 (25 bp)
ACTTGATTGGTTTGCACTTGGGTAT
LOC_Os03g16230
Os.34878.1.S1_a_at--85--7551Chr03:8929147..8929171 (25 bp)
GGGCCTACTGCATAGTGTTGTGTCG
LOC_Os03g16230
Os.34878.1.S1_a_at--321--10791Chr03:8929130..8929154 (25 bp)
TTGTGTCGTTCGTATGCGCCATAGA
LOC_Os03g16230
Os.34878.1.S1_a_at--820--4431Chr03:8929113..8929137 (25 bp)
GCCATAGACAAACGGAATGCCCTTG
LOC_Os03g16230
Target Sequence 
GAACCAATTCTGTTGCACCATGGTACATGAAGACTTCACTTGTGGAAGATGAATTGGCAAGGAAGGACTTCGCTGACAGC
GTCGTGCGTCGAACAGCGCTGAAGCGCGTGGGAGAACCAGAAGAGGTGTCATCGCTGGTCGCGTTCCTGTGCATGCCCGG
CGCTTCCTACATCACCGGCCAGACGATCTCGGTCGACGGCGGCATGACCATAAACGGACTGTATCCAACTCAGGACTAGA
CCGAATAGGCAAACCGTATGGCCGTATGGGGATCGAAGAACTGTGTTTGGAGAGGTCAGAGGTGAGGCTCGAACGTCAGT
AAAACTCAACTATCCCAAACAAACAGGAGATCGCAAATAGATGCTTGTGAACTTGATTGGTTTGCACTTGGGTATGCNCC
GCATGCTACTGTACTAAATTAAAAAAAAANNNNNNTTGTTGCGAGCAACAAAACGAAATACTGCGTGGATAGGGGGCCTA
CTGCATAGTGTTGTGTCGTTCGTATGCGCCATAGACAAACGGAATGCCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34878.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis