Browse Element(s) Details


Os.50427.1.S1_at

Description gb:AK121160.1
DB_XREF= gi:37990783
TID=Os.50427.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079P09, full insert sequence.
FL= gb:AK121160.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1613011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16090Os.14601.1.S1_at11/113+8849242..8854454LIM domain-containing protein, putative, expressed
LOC_Os03g16100OsAffx.3251.1.S1_at11/113+8861912..8862169hypothetical protein
LOC_Os03g16110Os.12164.2.S1_x_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110Os.12164.1.S1_at11/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16110OsAffx.24898.1.S1_at1/113+8863256..8868834Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os03g16120Os.15434.1.S1_at11/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_x_at10/113+8871212..8874611expressed protein
LOC_Os03g16120Os.15434.2.S1_at8/113+8871212..8874611expressed protein
LOC_Os03g16130Os.50427.1.S1_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.1.S1_a_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16130Os.21451.3.S1_x_at11/113+8875256..8881032Protein kinase domain containing protein, expressed
LOC_Os03g16140Os.7263.1.S1_at11/113+8881803..8885407digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g16150Os.56198.1.S1_at11/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16150Os.43951.1.S1_at10/113+8888314..8891909mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os03g16160OsAffx.25105.1.S1_at11/113+8895670..8896206hypothetical protein
LOC_Os03g16170Os.35013.1.S1_at11/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16170Os.27906.1.S1_a_at1/113+8900444..8902490Protein phosphatase 2C, putative, expressed
LOC_Os03g16180NANA3+8904205..8905896retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50427.1.S1_at--565--2631Chr03:8877487..8877511 (25 bp)
AACCTTGAGGTAATATATTCTTTGC
LOC_Os03g16130
Os.50427.1.S1_at--216--10191Chr03:8877472..8877496 (25 bp)
TATTCTTTGCTATAGTTTTACTTCT
LOC_Os03g16130
Os.50427.1.S1_at--387--6811Chr03:8877458..8877482 (25 bp)
GTTTTACTTCTACAGCATCACGTGA
LOC_Os03g16130
Os.50427.1.S1_at--606--3731Chr03:8877449..8877473 (25 bp)
CTACAGCATCACGTGACATGTTTGA
LOC_Os03g16130
Os.50427.1.S1_at--217--5671Chr03:8877435..8877459 (25 bp)
GACATGTTTGATATTCTGTATTGCA
LOC_Os03g16130
Os.50427.1.S1_at--308--10071Chr03:8877417..8877441 (25 bp)
TATTGCATTGACAGCCGGACACCAT
LOC_Os03g16130
Os.50427.1.S1_at--71--1471Chr03:8877052..8877076 (25 bp)
AGAAGGTATTGCAGTCTGTTGTGAC
LOC_Os03g16130
Os.50427.1.S1_at--1156--51Chr03:8877045..8877069 (25 bp)
ATTGCAGTCTGTTGTGACTATCACA
LOC_Os03g16130
Os.50427.1.S1_at--222--7371Chr03:8877032..8877056 (25 bp)
GTGACTATCACATGTTTCATTATAA
LOC_Os03g16130
Os.50427.1.S1_at--141--10251Chr03:8876985..8877009 (25 bp)
TTTGTTATTTCCTTACTTGTAAATG
LOC_Os03g16130
Os.50427.1.S1_at--79--10711Chr03:8876969..8876993 (25 bp)
TTGTAAATGTAGATTCCCCTATCAT
LOC_Os03g16130
Target Sequence 
AACCTTGAGGTAATATATTCTTTGCTATAGTTTTACTTCTACAGCATCACGTGACATGTTTGATATTCTGTATTGCATTG
ACAGCCGGACACCATCGGACATAAGAGATGGCTTTCCATTCATTAATAGCAGTCCTACGAGACCTTCAAGCCAAAGTTCT
CAGGAAGATTGTATGCCTTTTCCTTTGGATGATGAGTCAACTGGACAGGATGAAGGTCCTGTTTCTGATAGTAAGAGTGC
AATAAAATCCTATGGGTTTGCCACGAGTAAAAGGCTTGATAAAACTTCAGGTCAGAGTCCAACGAAACATTCAAGTCTGG
TCTCTAAATATATTAGGGGAAATAATTACGCATCTAGTAGTCAACGCCTGGACCATCCTAGGAGAATCAAGGAAAACAAG
GGTGATGAAGGGCACAACCCTAAAGGTGGTTATCCAGAAGGTATTGCAGTCTGTTGTGACTATCACATGTTTCATTATAA
TTGTGAAAAAGTTCTTACTAAATTTGTTATTTCCTTACTTGTAAATGTAGATTCCCCTATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis