Browse Element(s) Details


OsAffx.10905.3.S1_at

Description tigr:9629.m00354
TID=OsAffx.10905.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hsp20alpha crystallin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0436011/1116.9 kDa class I heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04310NANA1+1916551..1917233transposon protein, putative, unclassified
LOC_Os01g04320OsAffx.10903.2.S1_at11/111+1922127..1923305transposon protein, putative, unclassified
LOC_Os01g04330Os.36767.1.S1_at11/111+1927818..1928706EF hand family protein, expressed
LOC_Os01g04340Os.36328.1.S1_at11/111+1930919..193172616.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04350Os.14405.1.S1_at11/111+1937814..1938713Hsp20/alpha crystallin family protein, expressed
LOC_Os01g04360OsAffx.10905.3.S1_at11/111+1941063..194181316.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04370Os.4775.2.S1_at11/111+1945553..194638916.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.4775.1.S1_at11/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.57467.1.S1_x_at1/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390Os.51285.1.S1_at11/111+1951950..1952727expressed protein
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10905.3.S1_at--313--1571Chr01:1941240..1941264 (25 bp)
AGCTATATACGTCGTGCTGTGCTCG
LOC_Os01g04360
OsAffx.10905.3.S1_at--600--4731Chr01:1941225..1941249 (25 bp)
GCTGTGCTCGAGTCCGGTCGTGTCA
LOC_Os01g04360
OsAffx.10905.3.S1_at--11--1151Chr01:1941215..1941239 (25 bp)
AGTCCGGTCGTGTCAGGTCCATGTG
LOC_Os01g04360
OsAffx.10905.3.S1_at--885--3471Chr01:1941202..1941226 (25 bp)
CAGGTCCATGTGTGGCGAGTCTCGT
LOC_Os01g04360
OsAffx.10905.3.S1_at--677--1151Chr01:1941185..1941209 (25 bp)
AGTCTCGTGTCTGTGTGGCAGTTGT
LOC_Os01g04360
OsAffx.10905.3.S1_at--776--5031Chr01:1941168..1941192 (25 bp)
GCAGTTGTGTCGTGGCCTCCGCCAA
LOC_Os01g04360
OsAffx.10905.3.S1_at--342--8431Chr01:1941155..1941179 (25 bp)
GGCCTCCGCCAATGTAATGTATTCT
LOC_Os01g04360
OsAffx.10905.3.S1_at--1034--731Chr01:1941139..1941163 (25 bp)
ATGTATTCTGGTTAGACCGGAGCAC
LOC_Os01g04360
OsAffx.10905.3.S1_at--501--4251Chr01:1941123..1941147 (25 bp)
CCGGAGCACAACATTGGTTCGGTCC
LOC_Os01g04360
OsAffx.10905.3.S1_at--584--7891Chr01:1941108..1941132 (25 bp)
GGTTCGGTCCTTGGAATTGTCCCAT
LOC_Os01g04360
OsAffx.10905.3.S1_at--194--5211Chr01:1941095..1941119 (25 bp)
GAATTGTCCCATGGCGTCTGAATGA
LOC_Os01g04360
Target Sequence 
AGCTATATACGTCGTGCTGTGCTCGAGTCCGGTCGTGTCAGGTCCATGTGTGGCGAGTCTCGTGTCTGTGTGGCAGTTGT
GTCGTGGCCTCCGCCAATGTAATGTATTCTGGTTAGACCGGAGCACAACATTGGTTCGGTCCTTGGAATTGTCCCATGGC
GTCTGAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10905.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis