Browse Element(s) Details


OsAffx.10907.1.S1_at

Description tigr:9629.m00366
TID=OsAffx.10907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0448011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein
LOC_Os01g04450Os.53345.1.S1_at11/111+1974225..1979286Protein kinase domain containing protein, expressed
LOC_Os01g04460OsAffx.1929.1.S1_at11/111+1981069..1983196Protein kinase domain containing protein
LOC_Os01g04470OsAffx.23110.1.S1_at11/111+1985533..1988050hypothetical protein
LOC_Os01g04470OsAffx.10855.1.S1_at2/111+1985533..1988050hypothetical protein
LOC_Os01g04480OsAffx.10907.1.S1_at11/111+1990355..1993659Protein kinase domain containing protein, expressed
LOC_Os01g04490NANA1+1995229..1999941Protein kinase domain containing protein, expressed
LOC_Os01g04500Os.53461.1.S1_at10/111+2000185..2000686hypothetical protein
LOC_Os01g04510Os.6227.2.S1_x_at1/111+2002954..2004056hypothetical protein
LOC_Os01g04520Os.53382.1.S1_at6/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04520OsAffx.10881.2.S1_x_at1/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04530OsAffx.23111.1.S1_s_at11/111+2018217..2020407hypothetical protein
LOC_Os01g04530OsAffx.23111.2.S1_at1/111+2018217..2020407hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10907.1.S1_at--840--3171Chr01:1993107..1993131 (25 bp)
AATTGGCATTGCACGTGGATTGGAA
LOC_Os01g04480
OsAffx.10907.1.S1_at--112--3251Chr01:1993176..1993200 (25 bp)
CAAGCCCCAGAACATCCTTCTAGAT
LOC_Os01g04480
OsAffx.10907.1.S1_at--201--3651Chr01:1993192..1993216 (25 bp)
CTTCTAGATGAGGACTTCTGCCCTA
LOC_Os01g04480
OsAffx.10907.1.S1_at--231--5691Chr01:1993204..1993228 (25 bp)
GACTTCTGCCCTAAAGTTGCGGATT
LOC_Os01g04480
OsAffx.10907.1.S1_at--1099--5131Chr01:1993237..1993261 (25 bp)
GCAAAACTGTGTCGCCTCAAGGATA
LOC_Os01g04480
OsAffx.10907.1.S1_at--520--6151Chr01:1993286..1993310 (25 bp)
GAGGTACAGTTGGATTTATTGCCCC
LOC_Os01g04480
OsAffx.10907.1.S1_at--592--6631Chr01:1993336..1993360 (25 bp)
GTTGTGTCCACTAAATCAGATGTAT
LOC_Os01g04480
OsAffx.10907.1.S1_at--609--2151Chr01:1993361..1993385 (25 bp)
ACAGCTATGGTATGCTACTGCTAGA
LOC_Os01g04480
OsAffx.10907.1.S1_at--1075--8991Chr01:1993413..1993437 (25 bp)
TGAATTAACTACCAGCCATTCCACT
LOC_Os01g04480
OsAffx.10907.1.S1_at--833--7431Chr01:1993551..1993575 (25 bp)
GTGTATACAAACTAACCCAGGGAAT
LOC_Os01g04480
OsAffx.10907.1.S1_at--818--8131Chr01:1993571..1993595 (25 bp)
GGAATCGCCCTTCCATTAGTAGGGT
LOC_Os01g04480
Target Sequence 
AATTGGCATTGCACGTGGATTGGAATATTTGCATTGCAGGTGTAATACACGTATAATCCATTTTGATATCAAGCCCCAGA
ACATCCTTCTAGATGAGGACTTCTGCCCTAAAGTTGCGGATTTTGGATTGGCAAAACTGTGTCGCCTCAAGGATAGTGCC
CTCTCAATGGCTGAAGCAAGAGGTACAGTTGGATTTATTGCCCCAGAAGTATTTTCTAGAGGTTTTGGAGTTGTGTCCAC
TAAATCAGATGTATACAGCTATGGTATGCTACTGCTAGAATTGGTAGGAGGAAGGAGGCATGCTAATGAATTAACTACCA
GCCATTCCACTGGAAATTATTTTCCCAACAGGATTTATGATTGTTTAGTGAAAGATTTGCAAACTCATGCAATCATTACT
GAGGAGGAAGAGATTGCCAAATTGATGACATTAGTTGGTTTATGGTGTATACAAACTAACCCAGGGAATCGCCCTTCCAT
TAGTAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis