Browse Element(s) Details


Os.4763.1.S2_at

Description gb:CB654789
DB_XREF= gi:29658514
DB_XREF=OSJNEc07J05.r
CLONE=OSJNEc07J05
TID=Os.4763.1
CNT=58
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.4763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0480E02.2 (P0480E02.2), mRNA
FL= gb:AK099060.1 gb:AK098852.1 gb:AK070687.1 gb:AK065080.1 gb:AK098894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0465011/11PB1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein
LOC_Os01g04600Os.27936.1.A1_at10/111+2060417..2062797expressed protein
LOC_Os01g04610OsAffx.1931.1.S1_at11/111+2065390..2066065hypothetical protein
LOC_Os01g04610OsAffx.8723.1.S1_at2/111+2065390..2066065hypothetical protein
LOC_Os01g04610Os.54405.1.S1_at1/111+2065390..2066065hypothetical protein
LOC_Os01g04620Os.21801.1.S1_at11/111+2068645..2070405expressed protein
LOC_Os01g04630Os.8796.1.S2_s_at11/111+2071567..2074705muconate cycloisomerase, putative, expressed
LOC_Os01g04640OsAffx.1932.1.S1_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04640Os.21448.1.S1_s_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04660Os.16097.1.S1_a_at11/111+2093994..2097496Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g04670OsAffx.10908.1.S1_at11/111+2099100..2099402hypothetical protein
LOC_Os01g04680OsAffx.22792.1.S1_at6/111+2101993..2104641retrotransposon protein, putative, unclassified
LOC_Os01g04690Os.45412.1.S1_at11/111+2105749..2106437hypothetical protein
LOC_Os01g04699NANA1+2107828..2108453hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4763.1.S2_at--134--3591Chr01:2080993..2081017 (25 bp)
CATTTATATGGACTGCGAGCCTTCA
LOC_Os01g04650
Os.4763.1.S2_at--1117--1671Chr01:2080976..2081000 (25 bp)
AGCCTTCAGTATCAGTCCCATGTAT
LOC_Os01g04650
Os.4763.1.S2_at--223--3151Chr01:2080786..2080810 (25 bp)
AATTCACCCTGCTATGATTTGCCAA
LOC_Os01g04650
Os.4763.1.S2_at--930--10711Chr01:2080720..2080744 (25 bp)
TTGCTAGGTCTTTCTCAGTTGATTT
LOC_Os01g04650
Os.4763.1.S2_at--163--1251Chr01:2080704..2080728 (25 bp)
AGTTGATTTTCGCATCCGCTGAAGC
LOC_Os01g04650
Os.4763.1.S2_at--1013--5411Chr01:2080684..2080708 (25 bp)
GAAGCCGCGCATATATTTGGCACGA
LOC_Os01g04650
Os.4763.1.S2_at--1143--9751Chr01:2080657..2080681 (25 bp)
TAATCTGTTGATACGCCACCATGGT
LOC_Os01g04650
Os.4763.1.S2_at--92--831Chr01:2080637..2080661 (25 bp)
ATGGTACTCCTAGGTTGCACCTGGC
LOC_Os01g04650
Os.4763.1.S2_at--495--5091Chr01:2080621..2080645 (25 bp)
GCACCTGGCCTGTTATTTTAGCACA
LOC_Os01g04650
Os.4763.1.S2_at--141--7671Chr01:2080562..2080586 (25 bp)
GGGATCATATTCTTTTTCGGTAGCG
LOC_Os01g04650
Os.4763.1.S2_at--355--10351Chr01:2080550..2080574 (25 bp)
TTTTTCGGTAGCGAGATCCCAGTGC
LOC_Os01g04650
Target Sequence 
CATTTATATGGACTGCGAGCCTTCAGTATCAGTCCCATGTATTACTAGGTTATCAAATGAGCATATATATTTTTTGACGC
AAAAAATGAGCATATTTGCTTAGCTGCTAATTCATTACTTTTTTTACTGTGGATTTCTAATTTGTATAAGTAATCCTGAT
TTTCTTGCAAAATTTGTATAAGTAATCCTGATTTTCTTGCAAGGAGGAATTCACCCTGCTATGATTTGCCAATATGATGG
ATGCACTAATTCAGTGGGGGGTATTTGTAAGAGTTGCTAGGTCTTTCTCAGTTGATTTTCGCATCCGCTGAAGCCGCGCA
TATATTTGGCACGAGATAATCTGTTGATACGCCACCATGGTACTCCTAGGTTGCACCTGGCCTGTTATTTTAGCACATAA
TTATGCGTTTCTAATGTGGTGTGATTTGCCGGGGATCATATTCTTTTTCGGTAGCGAGATCCCAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4763.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis