Browse Element(s) Details


OsAffx.1931.1.S1_at

Description tigr:9629.m00379
TID=OsAffx.1931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0461011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04570Os.26983.1.S1_s_at11/111+2045519..2049320Protein kinase domain containing protein, expressed
LOC_Os01g04580Os.6149.1.S1_at11/111+2050385..2054438Protein kinase domain containing protein, expressed
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein
LOC_Os01g04600Os.27936.1.A1_at10/111+2060417..2062797expressed protein
LOC_Os01g04610OsAffx.1931.1.S1_at11/111+2065390..2066065hypothetical protein
LOC_Os01g04610OsAffx.8723.1.S1_at2/111+2065390..2066065hypothetical protein
LOC_Os01g04610Os.54405.1.S1_at1/111+2065390..2066065hypothetical protein
LOC_Os01g04620Os.21801.1.S1_at11/111+2068645..2070405expressed protein
LOC_Os01g04630Os.8796.1.S2_s_at11/111+2071567..2074705muconate cycloisomerase, putative, expressed
LOC_Os01g04640OsAffx.1932.1.S1_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04640Os.21448.1.S1_s_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1931.1.S1_at--467--5951Chr01:2065796..2065820 (25 bp)
GAGCAAGTGAGGATTCAGGCAAGCA
LOC_Os01g04610
OsAffx.1931.1.S1_at--140--10531Chr01:2065809..2065833 (25 bp)
TTCAGGCAAGCAGACAGAGACAGGA
LOC_Os01g04610
OsAffx.1931.1.S1_at--813--5651Chr01:2065827..2065851 (25 bp)
GACAGGAGTGCGTGCTCCAAATGAT
LOC_Os01g04610
OsAffx.1931.1.S1_at--1018--8531Chr01:2065853..2065877 (25 bp)
TGGAGCGTCCAAGTCCAGGAGTCAC
LOC_Os01g04610
OsAffx.1931.1.S1_at--215--3491Chr01:2065868..2065892 (25 bp)
CAGGAGTCACCTCCCCTGGATGGCA
LOC_Os01g04610
OsAffx.1931.1.S1_at--355--4191Chr01:2065881..2065905 (25 bp)
CCCTGGATGGCAACCGGTCGGCTCG
LOC_Os01g04610
OsAffx.1931.1.S1_at--432--8271Chr01:2065935..2065959 (25 bp)
GGCAGTTCAGAGCACCCCAGATACC
LOC_Os01g04610
OsAffx.1931.1.S1_at--891--4971Chr01:2065964..2065988 (25 bp)
GCATCTGCATCTATCGTGTACGTGA
LOC_Os01g04610
OsAffx.1931.1.S1_at--1146--7431Chr01:2065979..2066003 (25 bp)
GTGTACGTGACCGATCTGCCCGTAG
LOC_Os01g04610
OsAffx.1931.1.S1_at--753--411Chr01:2065992..2066016 (25 bp)
ATCTGCCCGTAGTTCGTCGTTGGAT
LOC_Os01g04610
OsAffx.1931.1.S1_at--382--9351Chr01:2066008..2066032 (25 bp)
TCGTTGGATTCGCACTTTGCAGCAC
LOC_Os01g04610
Target Sequence 
GAGCAAGTGAGGATTCAGGCAAGCAGACAGAGACAGGAGTGCGTGCTCCAAATGATTTGGAGCGTCCAAGTCCAGGAGTC
ACCTCCCCTGGATGGCAACCGGTCGGCTCGCGACGCGGCAAGCCAAGCCGCCGGCAGGCGGCAGTTCAGAGCACCCCAGA
TACCACCTGCATCTGCATCTATCGTGTACGTGACCGATCTGCCCGTAGTTCGTCGTTGGATTCGCACTTTGCAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis