Browse Element(s) Details


OsAffx.22792.1.S1_at

Description gb:NM_184288.1
DB_XREF= gi:34895655
GEN=P0480E02.7
TID=OsAffx.22792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0480E02.7 (P0480E02.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g046806/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04640OsAffx.1932.1.S1_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04640Os.21448.1.S1_s_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04660Os.16097.1.S1_a_at11/111+2093994..2097496Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g04670OsAffx.10908.1.S1_at11/111+2099100..2099402hypothetical protein
LOC_Os01g04680OsAffx.22792.1.S1_at6/111+2101993..2104641retrotransposon protein, putative, unclassified
LOC_Os01g04690Os.45412.1.S1_at11/111+2105749..2106437hypothetical protein
LOC_Os01g04699NANA1+2107828..2108453hypothetical protein
LOC_Os01g04710Os.739.1.S1_at11/111+2117207..2119122Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g04720Os.742.1.S1_x_at11/111+2127815..2134096leucine-rich repeat protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22792.1.S1_at--1109--8331Chr01:2099741..2099765 (25 bp)
GGCGGCATCGTTATTGGCATCGGCA
NONE
OsAffx.22792.1.S1_at--434--3552Chr01:2099746..2099770 (25 bp)
CATCGTTATTGGCATCGGCATCGGC
NONE
OsAffx.22792.1.S1_at--1046--4971Chr01:2099843..2099867 (25 bp)
GCATGCTGCTCGACAAGAATCTACC
NONE
OsAffx.22792.1.S1_at--102--3791Chr01:2099851..2099875 (25 bp)
CTCGACAAGAATCTACCGGAGCGGC
NONE
OsAffx.22792.1.S1_at--55--3571Chr01:2101955..2101979 (25 bp)
CATCAGCATCGCGTGACGTGGTGTG
NONE
OsAffx.22792.1.S1_at--350--1811Chr01:2102008..2102032 (25 bp)
ACCCAGGCCAACTTTGGCAGGCAGG
LOC_Os01g04680
OsAffx.22792.1.S1_at--249--4711Chr01:2102034..2102058 (25 bp)
GCGGCGACCAGGTGCTCCCACGAGA
LOC_Os01g04680
OsAffx.22792.1.S1_at--310--7311Chr01:2102045..2102069 (25 bp)
GTGCTCCCACGAGAATCTGTATCAG
LOC_Os01g04680
OsAffx.22792.1.S1_at--611--5251Chr01:2102057..2102081 (25 bp)
GAATCTGTATCAGAGCAGACGGCGG
LOC_Os01g04680
OsAffx.22792.1.S1_at--1104--591Chr01:2102099..2102123 (25 bp)
ATGCCGTGCTGGTGTCTCGTTGCAA
LOC_Os01g04680
OsAffx.22792.1.S1_at--476--9131Chr01:2102105..2102129 (25 bp)
TGCTGGTGTCTCGTTGCAATCACCA
LOC_Os01g04680
Target Sequence 
GGCGGCATCGTTATTGGCATCGGCATCGGCGCGTCGTGGTGGATTGGAGGGGAACGAGAGAGAGACAGGCGGATTGGGCA
GGCAGGGGCGGCGGGCGGCCTCGCATGCTGCTCGACAAGAATCTACCGGAGCGGCGGGGGACGGTGGTGGGCATCAGCAT
CGCGTGACGTGGTGTGGACTGTGGAGCTGATGCCGCGGGGAACCACCCAGGCCAACTTTGGCAGGCAGGGGCGGCGACCA
GGTGCTCCCACGAGAATCTGTATCAGAGCAGACGGCGGCGGCGGCGGCGGCGGCGATGCCGTGCTGGTGTCTCGTTGCAA
TCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis