Browse Element(s) Details


Os.742.1.S1_x_at

Description gb:AK103044.1
DB_XREF= gi:32988253
TID=Os.742.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0480E02.14 (P0480E02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117F21, full insert sequence.
FL= gb:AK103044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0472011/11leucine-rich repeat protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04680OsAffx.22792.1.S1_at6/111+2101993..2104641retrotransposon protein, putative, unclassified
LOC_Os01g04690Os.45412.1.S1_at11/111+2105749..2106437hypothetical protein
LOC_Os01g04699NANA1+2107828..2108453hypothetical protein
LOC_Os01g04710Os.739.1.S1_at11/111+2117207..2119122Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g04720Os.742.1.S1_x_at11/111+2127815..2134096leucine-rich repeat protein, putative, expressed
LOC_Os01g04730Os.45407.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_x_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730OsAffx.10909.1.S1_at10/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.45407.1.S1_x_at5/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04740OsAffx.22789.2.A1_at10/111+2137667..2138893hypothetical protein
LOC_Os01g04750Os.45405.1.A1_at11/111+2151128..2152796DNA-binding protein RAV1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.742.1.S1_x_at--790--4591Chr01:2133495..2133519 (25 bp)
GCGAAGTCTGTAATGCTTGCCGAGA
LOC_Os01g04720
Os.742.1.S1_x_at--556--8391Chr01:2133558..2133582 (25 bp)
GGCGCTCACTGAATTGATGGGCACC
LOC_Os01g04720
Os.742.1.S1_x_at--598--2011Chr01:2133632..2133656 (25 bp)
ACTCATTGACAATTGCTGGCCTGAA
LOC_Os01g04720
Os.742.1.S1_x_at--46--5651Chr01:2133662..2133686 (25 bp)
GACAGTTGTGACTTGTGACTCGTGA
LOC_Os01g04720
Os.742.1.S1_x_at--552--2491Chr01:2133708..2133732 (25 bp)
AACATGACGTCCCTGTAACTTCAGT
LOC_Os01g04720
Os.742.1.S1_x_at--214--2531Chr01:2133724..2133748 (25 bp)
AACTTCAGTCAAGCATCCATGGCAT
LOC_Os01g04720
Os.742.1.S1_x_at--941--10731Chr01:2133753..2133777 (25 bp)
TTGCAGTTACACTCACAGCTTAATT
LOC_Os01g04720
Os.742.1.S1_x_at--166--1331Chr01:2133885..2133909 (25 bp)
AGAGGCTTTGCTGTCTCGTATTAGC
LOC_Os01g04720
Os.742.1.S1_x_at--900--10451Chr01:2133911..2133935 (25 bp)
TTAGCTTTAGGCGTGTGCACTCCAT
LOC_Os01g04720
Os.742.1.S1_x_at--195--10811Chr01:2133958..2133982 (25 bp)
TTGGGTCAGGACAGATTCAGGCGTT
LOC_Os01g04720
Os.742.1.S1_x_at--944--9811Chr01:2134035..2134059 (25 bp)
TAAAACCTGACTTCGTTGGCACTGT
LOC_Os01g04720
Target Sequence 
GCGAAGTCTGTAATGCTTGCCGAGATGGAGGCGCACGGCCCGGACGGTTATTATACCAACGGGGGCGCTCACTGAATTGA
TGGGCACCGGAAATGGATATCTTCACAGGTTGTTGTATTTCTACTTACAGAGCAAACACTCATTGACAATTGCTGGCCTG
AAGCAAGGACAGTTGTGACTTGTGACTCGTGAACACAATTCACCAGCATCATCAACATGACGTCCCTGTAACTTCAGTCA
AGCATCCATGGCATTATTTTGCAGTTACACTCACAGCTTAATTACAAATGTAAAATATGTGCATGTTTTATGTGTACTAT
AATACGATGAAGTGGTGGTGGGGTGGTAGTAGTAGTTTGGTAATAGTAGTAGGGGTGCCTTATTTTTTGCAGAGGCTTTG
CTGTCTCGTATTAGCTTTAGCTTTAGGCGTGTGCACTCCATCAGCAATGTAAATGGAACCAGGTTGGGTCAGGACAGATT
CAGGCGTTGAAATGCTTGGGGGGTAAAAGCTGGTGTACTCATAGGTGTATTCTTTCTGTATAAAACCTGACTTCGTTGGC
ACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.742.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis