Browse Element(s) Details


Os.26422.1.S1_x_at

Description gb:AK058868.1
DB_XREF= gi:32968886
TID=Os.26422.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-006-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-A11, full insert sequence.
FL= gb:AK058868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0473011/1160S ribosomal protein L26-1, putative, expressed
LOC_Os12g054301/1160S ribosomal protein L26-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04710Os.739.1.S1_at11/111+2117207..2119122Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g04720Os.742.1.S1_x_at11/111+2127815..2134096leucine-rich repeat protein, putative, expressed
LOC_Os01g04730Os.45407.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_x_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730OsAffx.10909.1.S1_at10/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.45407.1.S1_x_at5/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04740OsAffx.22789.2.A1_at10/111+2137667..2138893hypothetical protein
LOC_Os01g04750Os.45405.1.A1_at11/111+2151128..2152796DNA-binding protein RAV1, putative, expressed
LOC_Os01g04760OsAffx.23115.1.S1_at11/111+2159525..2159773hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26422.1.S1_x_at--843--3351Chr01:2134673..2134697 (25 bp)
CACGCGTGACGAGCTCCCGGAGGAA
LOC_Os01g04730
Os.26422.1.S1_x_at--892--8711Chr01:2134760..2134784 (25 bp)
TGTCGTCGGAGCTCCGCCACAAGTA
LOC_Os01g04730
Os.26422.1.S1_x_at--1036--5891Chr01:2134768..2134792 (25 bp)
GAGCTCCGCCACAAGTACAACGTGC
LOC_Os01g04730
Os.26422.1.S1_x_at--393--4793Chr01:2135115..2135139 (25 bp)
GCTCCAGGAGATCGATTAGGCTCGT
LOC_Os01g04730
Os.26422.1.S1_x_at--431--8631Chr01:2135139..2135163 (25 bp)
TGGGTCGGATCTGCTGGTGCTCCTA
LOC_Os01g04730
Os.26422.1.S1_x_at--506--471Chr01:2135147..2135171 (25 bp)
ATCTGCTGGTGCTCCTACTGTTCCC
LOC_Os01g04730
Os.26422.1.S1_x_at--468--4191Chr01:2135173..2135197 (25 bp)
CCCTCCTTATCTAGCTTTTGTTTCG
LOC_Os01g04730
Os.26422.1.S1_x_at--36--10271Chr01:2135189..2135213 (25 bp)
TTTGTTTCGCTATCAACTGCTTCTG
LOC_Os01g04730
Os.26422.1.S1_x_at--85--1991Chr01:2135204..2135228 (25 bp)
ACTGCTTCTGCTAGGAGTTCATGCT
LOC_Os01g04730
Os.26422.1.S1_x_at--1146--6051Chr01:2135218..2135242 (25 bp)
GAGTTCATGCTACCTGAACACTGCT
LOC_Os01g04730
Os.26422.1.S1_x_at--495--9971Chr01:2135228..2135252 (25 bp)
TACCTGAACACTGCTTGCTGCTTTA
LOC_Os01g04730
Target Sequence 
CACGCGTGACGAGCTCCCGGAGGAAGTGCCGCAAGGCGCACTTCACGGCGCCGTCGTCCGTCCGCCGCGTGCTCATGTCG
GCGGCGCTGTCGTCGGAGCTCCGCCACAAGTACAACGTGCGGTCCATCCCGATCCGCAAGGACGACGAGGTGCAGGTGGT
GAGGGGGAGCTACAAGGGGGTGCCGNCGCCACCGGCGCCNTCGCTCCAGGAGATCGATTAGGCTCGTGGGTCGGATCTGC
TGGTGCTCCTACTGTTCCCCCCCTCCTTATCTAGCTTTTGTTTCGCTATCAACTGCTTCTGCTAGGAGTTCATGCTACCT
GAACACTGCTTGCTGCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26422.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis