Browse Element(s) Details


Os.45407.1.S1_s_at

Description gb:BE039834
DB_XREF= gi:8334850
DB_XREF=OC08G09
TID=Os.45407.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein L26 (P0480E02.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0473011/1160S ribosomal protein L26-1, putative, expressed
LOC_Os12g054303/1160S ribosomal protein L26-1, putative, expressed
LOC_Os11g053701/1160S ribosomal protein L26-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04710Os.739.1.S1_at11/111+2117207..2119122Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g04720Os.742.1.S1_x_at11/111+2127815..2134096leucine-rich repeat protein, putative, expressed
LOC_Os01g04730Os.45407.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_x_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730OsAffx.10909.1.S1_at10/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.45407.1.S1_x_at5/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04740OsAffx.22789.2.A1_at10/111+2137667..2138893hypothetical protein
LOC_Os01g04750Os.45405.1.A1_at11/111+2151128..2152796DNA-binding protein RAV1, putative, expressed
LOC_Os01g04760OsAffx.23115.1.S1_at11/111+2159525..2159773hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45407.1.S1_s_at--137--1171Chr01:2134781..2134805 (25 bp)
AGTACAACGTGCGGTCCATCCCGAT
LOC_Os01g04730
Os.45407.1.S1_s_at--1104--9131Chr01:2134790..2134814 (25 bp)
TGCGGTCCATCCCGATCCGCAAGGA
LOC_Os01g04730
Os.45407.1.S1_s_at--932--2913Chr01:2134810..2134834 (25 bp)
AAGGACGACGAGGTGCAGGTGGTGA
LOC_Os01g04730
Os.45407.1.S1_s_at--483--1051Chr01:2134871..2134895 (25 bp)
AGGTGTACCGCCGTCGCTGGGTCAT
LOC_Os01g04730
Os.45407.1.S1_s_at--843--4231Chr01:2134881..2134905 (25 bp)
CCGTCGCTGGGTCATCCACGTCGAG
LOC_Os01g04730
Os.45407.1.S1_s_at--1012--9591Chr01:2134892..2134916 (25 bp)
TCATCCACGTCGAGCGGATCACCAG
LOC_Os01g04730
Os.45407.1.S1_s_at--1043--5311Chr01:2134920..2134944 (25 bp)
GAAGGTGAACGGCTCCACCGTCAAC
LOC_Os01g04730
Os.45407.1.S1_s_at--884--1031Chr01:2134922..2134946 (25 bp)
AGGTGAACGGCTCCACCGTCAACGT
LOC_Os01g04730
Os.45407.1.S1_s_at--79--8971Chr01:2134925..2134949 (25 bp)
TGAACGGCTCCACCGTCAACGTCGG
LOC_Os01g04730
Os.45407.1.S1_s_at--165--8412Chr01:2135107..2135131 (25 bp)
GGCGCCTCGCTCCAGGAGATCGATT
LOC_Os01g04730
Os.45407.1.S1_s_at--420--4173Chr01:2135109..2135133 (25 bp)
CGCCTCGCTCCAGGAGATCGATTAG
LOC_Os01g04730
Target Sequence 
AGTACAACGTGCGGTCCATCCCGATCCGCAAGGACGACGAGGTGCAGGTGGTGAGGGGGAGCTACAAGGGGCGCGAGGGG
AAGGTGGTGCAGGTGTACCGCCGTCGCTGGGTCATCCACGTCGAGCGGATCACCAGGGAGAAGGTGAACGGCTCCACCGT
CAACGTCGGCATCCACCCCTCCAAGGTCGTCGTCACCAAGCTCAAGCTCGACAAGGACCGCAAGGCCATCCTCGACCNGC
AAGGCGCGCGGCCGCGCCGCCGACAAGGCCAAGGGCAAGTTCACCGCCGANGACGTCGCCGCCGCCGCCGGGGGTGCCGC
CGCCACCGGCGCCTCGCTCCAGGAGATCGATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45407.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis