Browse Element(s) Details


Os.45405.1.A1_at

Description gb:CB662290
DB_XREF= gi:29666015
DB_XREF=OSJNEd06C18.r
CLONE=OSJNEd06C18
TID=Os.45405.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA binding protein RAV2 (P0480E02.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0475011/11DNA-binding protein RAV1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04720Os.742.1.S1_x_at11/111+2127815..2134096leucine-rich repeat protein, putative, expressed
LOC_Os01g04730Os.45407.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_x_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730OsAffx.10909.1.S1_at10/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.45407.1.S1_x_at5/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04740OsAffx.22789.2.A1_at10/111+2137667..2138893hypothetical protein
LOC_Os01g04750Os.45405.1.A1_at11/111+2151128..2152796DNA-binding protein RAV1, putative, expressed
LOC_Os01g04760OsAffx.23115.1.S1_at11/111+2159525..2159773hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45405.1.A1_at--462--9111Chr01:2152255..2152279 (25 bp)
TGCTGCCCTAGCTACAATGATCGAT
LOC_Os01g04750
Os.45405.1.A1_at--79--251Chr01:2152293..2152317 (25 bp)
ATATCATCGTTGATCCTTCGCTTCA
LOC_Os01g04750
Os.45405.1.A1_at--1--10651Chr01:2152309..2152333 (25 bp)
TTCGCTTCACATCAGGTTCATCATT
LOC_Os01g04750
Os.45405.1.A1_at--263--6751Chr01:2152324..2152348 (25 bp)
GTTCATCATTCCTAGCTACATCGAT
LOC_Os01g04750
Os.45405.1.A1_at--393--10091Chr01:2152425..2152449 (25 bp)
TAGGATCAGAGTGTGCTAGCTACAT
LOC_Os01g04750
Os.45405.1.A1_at--538--6431Chr01:2152502..2152526 (25 bp)
GATCATTGCCAGATCGATCGAGGCG
LOC_Os01g04750
Os.45405.1.A1_at--340--8971Chr01:2152581..2152605 (25 bp)
TGAAACAAATCCGTCCCACGCATTG
LOC_Os01g04750
Os.45405.1.A1_at--370--7071Chr01:2152617..2152641 (25 bp)
GTAATCCGGGTTTCCATATGCATGG
LOC_Os01g04750
Os.45405.1.A1_at--35--7291Chr01:2152652..2152676 (25 bp)
GTGCCATGTGTCTGCTATTGCTATA
LOC_Os01g04750
Os.45405.1.A1_at--835--10051Chr01:2152686..2152710 (25 bp)
TAGTCTAGCTACATTTCCAAATCAC
LOC_Os01g04750
Os.45405.1.A1_at--249--6651Chr01:2152722..2152746 (25 bp)
GTTGTTCTCATAATGGATTCCTCTG
LOC_Os01g04750
Target Sequence 
TGCTGCCCTAGCTACAATGATCGATCGATGGATGATCCATATCATCGTTGATCCTTCGCTTCACATCAGGTTCATCATTC
CTAGCTACATCGATATATGTACCTATAATTTGATGATGAGATGAACTTCTTCAAAATTCAAATTAATCTCTGAAGAAACC
AACGGAGAATTAGGATCAGAGTGTGCTAGCTACATGTGAGCTAGAGATTAGAGAAATTTAAGAGTGTGTGTTATATGTAA
ATATATCGATCATTGCCAGATCGATCGAGGCGAAACTATAGAATTTTGCCTTGGGGTTTAATTAGCCTTAATTTGTACCC
AAAAATTGAAACAAATCCGTCCCACGCATTGCATTGGGATGTGTAATCCGGGTTTCCATATGCATGGTTATGGGAATGTG
CCATGTGTCTGCTATTGCTATATATAGTTATTAGTCTAGCTACATTTCCAAATCACATGTTAAATTTGTTGTTCTCATAA
TGGATTCCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45405.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis