Browse Element(s) Details


Os.739.1.S1_at

Description gb:AK068990.1
DB_XREF= gi:32979014
TID=Os.739.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) nucleoid DNA-binding protein cnd41-like protein (P0480E02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170M01, full insert sequence.
FL= gb:AK068990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0471011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04660Os.16097.1.S1_a_at11/111+2093994..2097496Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g04670OsAffx.10908.1.S1_at11/111+2099100..2099402hypothetical protein
LOC_Os01g04680OsAffx.22792.1.S1_at6/111+2101993..2104641retrotransposon protein, putative, unclassified
LOC_Os01g04690Os.45412.1.S1_at11/111+2105749..2106437hypothetical protein
LOC_Os01g04699NANA1+2107828..2108453hypothetical protein
LOC_Os01g04710Os.739.1.S1_at11/111+2117207..2119122Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g04720Os.742.1.S1_x_at11/111+2127815..2134096leucine-rich repeat protein, putative, expressed
LOC_Os01g04730Os.45407.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_x_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.26422.1.S1_s_at11/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730OsAffx.10909.1.S1_at10/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04730Os.45407.1.S1_x_at5/111+2134587..213579760S ribosomal protein L26-1, putative, expressed
LOC_Os01g04740OsAffx.22789.2.A1_at10/111+2137667..2138893hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.739.1.S1_at--1065--1891Chr01:2118584..2118608 (25 bp)
ACGTGCTACGACCTGTCGGACCGGA
LOC_Os01g04710
Os.739.1.S1_at--195--8331Chr01:2118663..2118687 (25 bp)
GGCTGCCGGCGAAGAACTACCTGAT
LOC_Os01g04710
Os.739.1.S1_at--302--1851Chr01:2118731..2118755 (25 bp)
ACGAACGCGGCGGTGTCCATCATCG
LOC_Os01g04710
Os.739.1.S1_at--9--7631Chr01:2118773..2118797 (25 bp)
GGGACCCGCGTCAGCTTCGACACGG
LOC_Os01g04710
Os.739.1.S1_at--656--3731Chr01:2118832..2118856 (25 bp)
CTAAGTCATTAGCAGCGATGGCTTA
LOC_Os01g04710
Os.739.1.S1_at--715--7071Chr01:2118899..2118923 (25 bp)
GTAATTAAGCGCGAGAGTGTGTGAT
LOC_Os01g04710
Os.739.1.S1_at--144--4351Chr01:2118937..2118961 (25 bp)
CCAGTGCCAGGCTCTGTGGGCTTTG
LOC_Os01g04710
Os.739.1.S1_at--775--891Chr01:2118973..2118997 (25 bp)
AGGCGAGGACAAATGCCAGCCTGTC
LOC_Os01g04710
Os.739.1.S1_at--728--9091Chr01:2118999..2119023 (25 bp)
TGCTCTCTGCTTGTCGATGGATGGG
LOC_Os01g04710
Os.739.1.S1_at--474--7771Chr01:2119046..2119070 (25 bp)
GGTGCTTTGCTGTTTCGTCTTTGAT
LOC_Os01g04710
Os.739.1.S1_at--1070--6831Chr01:2119057..2119081 (25 bp)
GTTTCGTCTTTGATGTCTCGGCAAA
LOC_Os01g04710
Target Sequence 
ACGTGCTACGACCTGTCGGACCGGACGAGCGTGGAGGTCCCCGCGGTGTCGCTGCGGTTCGCCGGCGGCGGCGAGCTCCG
GCTGCCGGCGAAGAACTACCTGATCCCGGTGGACGGCGCGGGGACGTACTGCCTGGCGTTCGCGCCGACGAACGCGGCGG
TGTCCATCATCGGGAACGTGCAGCAGCAGGGGACCCGCGTCAGCTTCGACACGGCCAAGTCCACCGTCGGCTTCACCACC
AACAAGTGCTAAGTCATTAGCAGCGATGGCTTAACTTAATTAGCCAGATCAAGGAGTGATTAGTGGTGGTAAATGGTAAT
TAAGCGCGAGAGTGTGTGATNTGGGGGTGGGGCCCAGTGCCAGGCTCTGTGGGCTTTGGGAGAGACGAAAGGCGAGGACA
AATGCCAGCCTGTCCTGCTCTCTGCTTGTCGATGGATGGGGGGGCCCACTCTCTTCTTCTCCGGTGCTTTGCTGTTTCGT
CTTTGATGTCTCGGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis