Browse Element(s) Details


Os.16097.1.S1_a_at

Description gb:AK073130.1
DB_XREF= gi:32983153
TID=Os.16097.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphatidic acid phosphatase alpha (P0480E02.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033011L13, full insert sequence.
FL= gb:AK073130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0466011/11Lipid phosphate phosphatase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04620Os.21801.1.S1_at11/111+2068645..2070405expressed protein
LOC_Os01g04630Os.8796.1.S2_s_at11/111+2071567..2074705muconate cycloisomerase, putative, expressed
LOC_Os01g04640OsAffx.1932.1.S1_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04640Os.21448.1.S1_s_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04660Os.16097.1.S1_a_at11/111+2093994..2097496Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g04670OsAffx.10908.1.S1_at11/111+2099100..2099402hypothetical protein
LOC_Os01g04680OsAffx.22792.1.S1_at6/111+2101993..2104641retrotransposon protein, putative, unclassified
LOC_Os01g04690Os.45412.1.S1_at11/111+2105749..2106437hypothetical protein
LOC_Os01g04699NANA1+2107828..2108453hypothetical protein
LOC_Os01g04710Os.739.1.S1_at11/111+2117207..2119122Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006644biological_processphospholipid metabolism
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005887cellular_componentintegral to plasma membrane
GO:0008195molecular_functionphosphatidate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16097.1.S1_a_at--1018--7991Chr01:2096751..2096775 (25 bp)
GGATGTGTTTGCTGGCGGCCTACTA
LOC_Os01g04660
Os.16097.1.S1_a_at--602--4711Chr01:2096761..2096871 (25 bp)
GCTGGCGGCCTACTAGGATTTATCA
LOC_Os01g04660
Os.16097.1.S1_a_at--375--1011Chr01:2096861..2096885 (25 bp)
AGGATTTATCATGGCGATGCTCTGT
LOC_Os01g04660
Os.16097.1.S1_a_at--195--6351Chr01:2096876..2096900 (25 bp)
GATGCTCTGTTACTTGCACTTCTTT
LOC_Os01g04660
Os.16097.1.S1_a_at--959--7631Chr01:2097037..2097061 (25 bp)
GGGACCGTATGCATACTTCCATATG
LOC_Os01g04660
Os.16097.1.S1_a_at--765--10731Chr01:2097063..2097087 (25 bp)
TTGAGGAGCTTCAAGTGGCCAACTC
LOC_Os01g04660
Os.16097.1.S1_a_at--83--8451Chr01:2097078..2097102 (25 bp)
TGGCCAACTCCCACAATGCAGAAAG
LOC_Os01g04660
Os.16097.1.S1_a_at--174--3411Chr01:2097104..2097128 (25 bp)
CAGCAGTCAGTGTGTGGGCATCATG
LOC_Os01g04660
Os.16097.1.S1_a_at--672--7591Chr01:2097119..2097143 (25 bp)
GGGCATCATGTTGAGCTATCTAGAC
LOC_Os01g04660
Os.16097.1.S1_a_at--228--5591Chr01:2097165..2097189 (25 bp)
GAAATGATCTGGAAGCTGGTCGTGT
LOC_Os01g04660
Os.16097.1.S1_a_at--137--8611Chr01:2097181..2097205 (25 bp)
TGGTCGTGTGTAACATCCCTAGCAT
LOC_Os01g04660
Target Sequence 
GGATGTGTTTGCTGGCGGCCTACTAGGATTTATCATGGCGATGCTCTGTTACTTGCACTTCTTTCCACCTCCATACCATC
ATCAAGGTTGGGGACCGTATGCATACTTCCATATGCTTGAGGAGCTTCAAGTGGCCAACTCCCACAATGCAGAAAGCCAG
CAGTCAGTGTGTGGGCATCATGTTGAGCTATCTAGACNACACAATAGCAGGACATCAAGAAATGATCTGGAAGCTGGTCG
TGTGTAACATCCCTAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16097.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis