Browse Element(s) Details


Os.9380.2.S1_at

Description gb:AK059519.1
DB_XREF= gi:32969537
TID=Os.9380.2
CNT=37
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9380 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for Rieske Fe-S protein, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C04, full insert sequence.
FL= gb:AK059519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3266011/11Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32630OsAffx.14099.1.S1_at7/114+19471379..19473560hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_s_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.1.S1_at3/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.2.S1_x_at2/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.1.S1_at1/114+19482391..19483598hypothetical protein
LOC_Os04g32650Os.5857.1.S1_at11/114+19489656..19494787Glycyl-tRNA synthetase, putative, expressed
LOC_Os04g32660Os.9380.2.S1_at11/114+19497875..19500621Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os04g32670Os.280.1.S1_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32670Os.280.1.S2_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32680NANA4+19506015..19506942Pollen-specific protein C13 precursor, putative, expressed
LOC_Os04g32690Os.57306.1.S1_at1/114+19509038..19522497hypothetical protein
LOC_Os04g32690Os.26919.1.S1_at1/114+19509038..19522497hypothetical protein
LOC_Os04g32700Os.18396.1.S1_at11/114+19523500..19524106expressed protein
LOC_Os04g32710Os.16157.1.S1_at1/114+19525426..19526637NA

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9380.2.S1_at--185--6191Chr04:19500023..19500047 (25 bp)
GAGGACGACATAGCGCTGGCCAATA
LOC_Os04g32660
Os.9380.2.S1_at--894--3091Chr04:19500044..19500068 (25 bp)
AATAGCGTGGACGTTGGGTCCCTGC
LOC_Os04g32660
Os.9380.2.S1_at--552--8491Chr04:19500110..19500134 (25 bp)
TGGCTAGTGGTCATTGGCGTCTGCA
LOC_Os04g32660
Os.9380.2.S1_at--760--4891Chr04:19500259..19500283 (25 bp)
GGTCCCTACCTACAGTTTCTTGGAG
LOC_Os04g32660
Os.9380.2.S1_at--688--5971Chr04:19500284..19500308 (25 bp)
GAGAACAAGCTCCTCATAGGCTAAG
LOC_Os04g32660
Os.9380.2.S1_at--720--2771Chr04:19500306..19500330 (25 bp)
AAGAGCCTGAGACCACTCTCTATAT
LOC_Os04g32660
Os.9380.2.S1_at--805--10191Chr04:19500326..19500350 (25 bp)
TATATCTATCTACCTTCTGCACTGG
LOC_Os04g32660
Os.9380.2.S1_at--909--6011Chr04:19500354..19500378 (25 bp)
GAGAGTCCCTATTGTGCTGTCTATT
LOC_Os04g32660
Os.9380.2.S1_at--491--6691Chr04:19500407..19500431 (25 bp)
GTTCCGCAACGATTATTGCCATGTT
LOC_Os04g32660
Os.9380.2.S1_at--895--9451Chr04:19500501..19500525 (25 bp)
TCTGTAAGTTACCTGGGACGTTTAT
LOC_Os04g32660
Os.9380.2.S1_at--449--10071Chr04:19500544..19500568 (25 bp)
TAGGAAGCACTCTGAGCACCTACCT
LOC_Os04g32660
Target Sequence 
GAGGACGACATAGCGCTGGCCAATAGCGTGGACGTTGGGTCCCTGCGCCATCCCCAGCAGGACGCAGAGCGTGTGAAGAA
CCCAGAGTGGCTAGTGGTCATTGGCGTCTGCACCCACCTTGGTTGCATTCCTCTCCCCAATGCTGGAGATTTNCGGAGGT
TGGTTCTGCCCGTGCCATGGCTCCCACTACGACATCTCTGGCAGGATTCGCAAGGGCCCCGCTCCATTCAACCTGGAGGT
CCCTACCTACAGTTTCTTGGAGGAGAACAAGCTCCTCATAGGCTAAGAGCCTGAGACCACTCTCTATATCTATCTACCTT
CTGCACTGGGGTGAGAGTCCCTATTGTGCTGTCTATTTTGTTACAGTTTGGCTAGAAAATTTTTTGTTCCGCAACGATTA
TTGCCATGTTGGCTGTTACTTTCCGAGGTGCATTTTGGAGCGCGAAATAATTTGCTACTATGATGCTACTGAAATGTAAT
CTGTAAGTTACCTGGGACGTTTATTTCTGGGGGTACAAACAATAGGAAGCACTCTGAGCACCTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9380.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis