Browse Element(s) Details


Os.18396.1.S1_at

Description gb:AK107729.1
DB_XREF= gi:32992938
TID=Os.18396.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-F06, full insert sequence.
FL= gb:AK107729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3270011/11expressed protein
LOC_Os05g034301/11Sumoylation ligase E3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32660Os.9380.2.S1_at11/114+19497875..19500621Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os04g32670Os.280.1.S1_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32670Os.280.1.S2_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32680NANA4+19506015..19506942Pollen-specific protein C13 precursor, putative, expressed
LOC_Os04g32690Os.57306.1.S1_at1/114+19509038..19522497hypothetical protein
LOC_Os04g32690Os.26919.1.S1_at1/114+19509038..19522497hypothetical protein
LOC_Os04g32700Os.18396.1.S1_at11/114+19523500..19524106expressed protein
LOC_Os04g32710Os.16157.1.S1_at1/114+19525426..19526637NA
LOC_Os04g32720Os.28943.1.S1_x_at4/114+19536603..19539838retrotransposon protein, putative, unclassified
LOC_Os04g32730NANA4+19540826..19546427retrotransposon protein, putative, unclassified
LOC_Os04g32740Os.54478.1.A1_at10/114+19548474..19552799Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os04g32740OsAffx.26291.1.S1_at10/114+19548474..19552799Nudix hydrolase 13, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0019789molecular_functionSUMO ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18396.1.S1_at--379--4051Chr04:19524050..19524074 (25 bp)
CGATCGATCTCCTGCCCAAGAGCTA
LOC_Os04g32700
Os.18396.1.S1_at--865--6411Chr04:19524045..19524069 (25 bp)
GATCTCCTGCCCAAGAGCTACGTGC
LOC_Os04g32700
Os.18396.1.S1_at--836--5911Chr04:19524031..19524055 (25 bp)
GAGCTACGTGCCATGCATATGGCCG
LOC_Os04g32700
Os.18396.1.S1_at--1113--9191Chr04:19524023..19524047 (25 bp)
TGCCATGCATATGGCCGGTGCAGGC
LOC_Os04g32700
Os.18396.1.S1_at--1151--2051Chr04:19523856..19523880 (25 bp)
ACTTCCGGAGCAGCATGGTGGACTG
LOC_Os04g32700
Os.18396.1.S1_at--395--8031Chr04:19523813..19523837 (25 bp)
GGAGGTGGTGAGCTGCTCCAGCGCG
LOC_Os04g32700
Os.18396.1.S1_at--101--471Chr04:19523600..19523624 (25 bp)
ATCTGATGTGATCCACTATATATAT
LOC_Os04g32700
Os.18396.1.S1_at--1045--9791Chr04:19523571..19523595 (25 bp)
TAACTAGTTAGTTCGATTAATTTCG
LOC_Os04g32700
Os.18396.1.S1_at--1117--4031Chr04:19523558..19523582 (25 bp)
CGATTAATTTCGATGCTGGATGTGT
LOC_Os04g32700
Os.18396.1.S1_at--1071--4712Chr05:1409615..1409645 (24 bp)
GCTGGATGTGTTTAGTATATTTACC
LOC_Os05g03430
Os.18396.1.S1_at--569--6871Chr04:19523530..19523554 (25 bp)
GTATATTTACCTACTGTTTGACATA
LOC_Os04g32700
Target Sequence 
CGATCGATCTCCTGCCCAAGAGCTACGTGCCATGCATATGGCCGGTGCAGGCGGCAGCAACCGCGCCGTGCGGTGCGCGG
CGGCCGTCGCGTTCATCGTCGTCGTCGTCGTCGTGGGCTCGGCCGACGGCAGGGGCGGCGGCCGGGGCGGACACGTACTA
CATGGCGGCGGCGGCGGGGACGACCCGGGCAACTTCCGGAGCAGCATGGTGGACTGCATGATGGAGTGCGCGGCGGAGGT
GGTGAGCTGCTCCAGCGCGTGCGCCGGGAAGCCCCGCGGCGAGGCGCCCACCTGCGCCGCCGACTGCGTCCACGGCGANA
TCAGCTGCCNCGCCGGGTGCGGCGCCCCCGCCCCGCCCGCCGCGTGACCCACCCAACGCAAAAACCACCTTCTCCCATTC
ACGCCCCTNCTGCGCATCGNCGTTTGCGTGATGAAATGGAGTAGTATATCTGATGTGATCCACTATATATATGGAGTAAC
TAGTTAGTTCGATTAATTTCGATGCTGGATGTGTTTAGTATATTTACCTACTGTTTGACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis