Browse Element(s) Details


Os.26919.1.S1_at

Description gb:AK065158.1
DB_XREF= gi:32975176
TID=Os.26919.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002B23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002B23, full insert sequence.
FL= gb:AK065158.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g326901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32650Os.5857.1.S1_at11/114+19489656..19494787Glycyl-tRNA synthetase, putative, expressed
LOC_Os04g32660Os.9380.2.S1_at11/114+19497875..19500621Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os04g32670Os.280.1.S1_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32670Os.280.1.S2_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32680NANA4+19506015..19506942Pollen-specific protein C13 precursor, putative, expressed
LOC_Os04g32690Os.57306.1.S1_at1/114+19509038..19522497hypothetical protein
LOC_Os04g32690Os.26919.1.S1_at1/114+19509038..19522497hypothetical protein
LOC_Os04g32700Os.18396.1.S1_at11/114+19523500..19524106expressed protein
LOC_Os04g32710Os.16157.1.S1_at1/114+19525426..19526637NA
LOC_Os04g32720Os.28943.1.S1_x_at4/114+19536603..19539838retrotransposon protein, putative, unclassified
LOC_Os04g32730NANA4+19540826..19546427retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26919.1.S1_at--496--5051Chr04:19509079..19509103 (25 bp)
GCAGAAGCAGCATTTAATCCCACAC
LOC_Os04g32690
Os.26919.1.S1_at--990--6251Chr04:19508464..19508488 (25 bp)
GATGTCCTTCTGCAAGTACATGGAT
NONE
Os.26919.1.S1_at--966--10591Chr04:19508457..19508481 (25 bp)
TTCTGCAAGTACATGGATATCTCCA
NONE
Os.26919.1.S1_at--785--3031Chr04:19508384..19508408 (25 bp)
AATCCTGACCCTTCTGTTGTAGTTA
NONE
Os.26919.1.S1_at--205--10751Chr04:19508244..19508268 (25 bp)
TTGACAGTGCCCTGACCCTGAAATG
NONE
Os.26919.1.S1_at--802--1091Chr04:19508200..19508224 (25 bp)
AGTGGGATTCTCAGTACAGCTACGC
NONE
Os.26919.1.S1_at--162--2151Chr04:19508185..19508209 (25 bp)
ACAGCTACGCTTTTGGTGGTAAAAT
NONE
Os.26919.1.S1_at--278--10351Chr04:19508120..19508144 (25 bp)
TTTTTCATCAGGGACTTGCGGTTAT
NONE
Os.26919.1.S1_at--914--4671Chr04:19508103..19508127 (25 bp)
GCGGTTATTTTCATGCGAGATTTTC
NONE
Os.26919.1.S1_at--379--4611Chr04:19508089..19508113 (25 bp)
GCGAGATTTTCTTAACCCTATCTTG
NONE
Os.26919.1.S1_at--1127--10552Chr04:19508081..19508105 (25 bp)
TTCTTAACCCTATCTTGTATTTTGG
NONE
Target Sequence 
GCAGAAGCAGCATTTAATCCCACACNTGTTACAAACAAGGGATCTGCTCATTCCTCNGAGGCACCAAAGGCGTTATATTG
GGTGATGTCCTTCTGCAAGTACATGGATATCTCCATGGATTTAGTCGAGTCATGCTTACCATCTTCCTCTCTGGCTATCC
TGCAATCCTGACCCTTCTGTTGTAGTTATACATAGGTTTACAAAATCGGTTAAGCCTTAGAACTGTTAGCTTTTGAGCTT
TTCTTCTCCATTCCATGATCCAGGGTTTATAACTTACGAGGTCGCAATGGTGCTAGTTGACACTTGACAGTGCCCTGACC
CTGAAATGCTGCNAGTGCAGTAGCTCTAGTGGGATTCTCAGTACAGCTACGCTTTTGGTGGTAAAATGAAATGGAGTAGA
GNGCGTACTGTTGAACATTCATGTGAGTTTTTCATCAGGGACTTGCGGTTATTTTCATGCGAGATTTTCTTAACCCTATC
TTGTATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis