Browse Element(s) Details


Os.280.1.S2_at

Description gb:AK107473.1
DB_XREF= gi:32992682
TID=Os.280.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B06, full insert sequence.
FL= gb:AK107473.1 gb:AK073335.1 gb:AK059806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3267011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32640OsAffx.18764.3.S1_s_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.1.S1_at3/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.2.S1_x_at2/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.1.S1_at1/114+19482391..19483598hypothetical protein
LOC_Os04g32650Os.5857.1.S1_at11/114+19489656..19494787Glycyl-tRNA synthetase, putative, expressed
LOC_Os04g32660Os.9380.2.S1_at11/114+19497875..19500621Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os04g32670Os.280.1.S1_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32670Os.280.1.S2_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32680NANA4+19506015..19506942Pollen-specific protein C13 precursor, putative, expressed
LOC_Os04g32690Os.57306.1.S1_at1/114+19509038..19522497hypothetical protein
LOC_Os04g32690Os.26919.1.S1_at1/114+19509038..19522497hypothetical protein
LOC_Os04g32700Os.18396.1.S1_at11/114+19523500..19524106expressed protein
LOC_Os04g32710Os.16157.1.S1_at1/114+19525426..19526637NA

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.280.1.S2_at--1125--191Chr04:19506698..19506722 (25 bp)
ATTTCCTTACCCTTGATATACTCGG
LOC_Os04g32670
Os.280.1.S2_at--131--9911Chr04:19506716..19506740 (25 bp)
TACTCGGTGACATTGGTCTCGAACC
LOC_Os04g32670
Os.280.1.S2_at--636--8391Chr04:19506742..19506766 (25 bp)
GGCGCGGCACGTGTCACAGTAGACA
LOC_Os04g32670
Os.280.1.S2_at--705--1171Chr04:19506759..19506783 (25 bp)
AGTAGACACGGCCTTGGACGACGTA
LOC_Os04g32670
Os.280.1.S2_at--896--791Chr04:19506876..19506900 (25 bp)
ATGTGGCTGCAAATGTGTTTTTCCC
LOC_Os04g32670
Os.280.1.S2_at--989--8171Chr04:19506959..19506983 (25 bp)
GGAACGGATTCGAGCTGTGGTATAA
LOC_Os04g32670
Os.280.1.S2_at--221--211Chr04:19507005..19507029 (25 bp)
ATTTCCATGGCTGTCCTTGCAAGTA
LOC_Os04g32670
Os.280.1.S2_at--553--3051Chr04:19507032..19507056 (25 bp)
AATCGTTGGAGATGCCGTTGGGATC
LOC_Os04g32670
Os.280.1.S2_at--751--7711Chr04:19507161..19507185 (25 bp)
GGGTGTTTTAGCCAGCCAGAAATCT
LOC_Os04g32670
Os.280.1.S2_at--645--271Chr04:19507232..19507256 (25 bp)
ATAGATTTCATGTTGGGCGCCTTGA
LOC_Os04g32670
Os.280.1.S2_at--274--8411Chr04:19507247..19507271 (25 bp)
GGCGCCTTGAATGCAGTAACTTCAT
LOC_Os04g32670
Target Sequence 
ATTTCCTTACCCTTGATATACTCGGTGACATTGGTCTCGAACCCGGCGCGGCACGTGTCACAGTAGACACGGCCTTGGAC
GACGTAGTCCGGTGCGTCGGTGGCAGTGGCAGTGCTGGCAAGGACATAGAAGAGGATGCCGAAGATCACCGGAATGGTGC
GGAGAGAGGCCATGGATGATGTGGCTGCAAATGTGTTTTTCCCCTTCCTCTATTATTATTTGGGGAAAATGTGAGAGGAG
GGTACTGAAATGGCCTGGTTTGGAACGGATTCGAGCTGTGGTATAAGTAACCTGGGGAACCTGGAGGATTTCCATGGCTG
TCCTTGCAAGTAGGAATCGTTGGAGATGCCGTTGGGATCGAGTGGCTGAAGAGAAGGCAGATTGTTGATTTGATCCTACT
TTTGATGATGACCAAGCTAAAAATGGGTGAATGTTTTGACGAGCGAGGCTATTATGCCGTTGTGGGTGTTTTAGCCAGCC
AGAAATCTGTCGAATTTTGACGTTACGGAAGCAGCAGACAACTTGGGAACCTGAATAGATTTCATGTTGGGCGCCTTGAA
TGCAGTAACTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.280.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis