Browse Element(s) Details


Os.5857.1.S1_at

Description gb:AK061199.1
DB_XREF= gi:32971217
TID=Os.5857.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-A04, full insert sequence.
FL= gb:AK061199.1 gb:AK059136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3265011/11Glycyl-tRNA synthetase, putative, expressed
LOC_Os12g082101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32620Os.9523.1.S1_at11/114+19464268..19466627AP2 domain containing protein, expressed
LOC_Os04g32630OsAffx.14099.1.S1_at7/114+19471379..19473560hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_s_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.1.S1_at3/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.2.S1_x_at2/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.1.S1_at1/114+19482391..19483598hypothetical protein
LOC_Os04g32650Os.5857.1.S1_at11/114+19489656..19494787Glycyl-tRNA synthetase, putative, expressed
LOC_Os04g32660Os.9380.2.S1_at11/114+19497875..19500621Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os04g32670Os.280.1.S1_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32670Os.280.1.S2_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32680NANA4+19506015..19506942Pollen-specific protein C13 precursor, putative, expressed
LOC_Os04g32690Os.57306.1.S1_at1/114+19509038..19522497hypothetical protein
LOC_Os04g32690Os.26919.1.S1_at1/114+19509038..19522497hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006426biological_processglycyl-tRNA aminoacylation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0004820molecular_functionglycine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5857.1.S1_at--622--391Chr04:19494190..19494214 (25 bp)
ATCAGATCCGCGTTGAGGTCGATGA
LOC_Os04g32650
Os.5857.1.S1_at--757--8251Chr04:19494247..19494271 (25 bp)
GGCAGAGCACCTGGGCAGACATCAT
LOC_Os04g32650
Os.5857.1.S1_at--646--1411Chr04:19494263..19494287 (25 bp)
AGACATCATGTGGAGGTACCCGGCA
LOC_Os04g32650
Os.5857.1.S1_at--1145--2411Chr04:19494359..19494383 (25 bp)
AAAACCTCTGGCTGGAATTGAGATG
LOC_Os04g32650
Os.5857.1.S1_at--35--8911Chr04:19494377..19494401 (25 bp)
TGAGATGGTTGTTGCCATCCTGCTT
LOC_Os04g32650
Os.5857.1.S1_at--75--4951Chr04:19494442..19494466 (25 bp)
GCATTGTTCTGTAATCTCGATGATT
LOC_Os04g32650
Os.5857.1.S1_at--166--1312Chr04:19494482..19494506 (25 bp)
AGATGATTTTCTCCTGTTTACTGTT
LOC_Os04g32650
Os.5857.1.S1_at--813--10231Chr04:19494511..19494535 (25 bp)
TTTGGCGTGGTCTACCACATAGTTC
LOC_Os04g32650
Os.5857.1.S1_at--64--6091Chr04:19494599..19494623 (25 bp)
GAGTATCAGTCTTTACATTGTCATA
LOC_Os04g32650
Os.5857.1.S1_at--936--7131Chr04:19494618..19494642 (25 bp)
GTCATATTGTTGATTCTCTGCGAAA
LOC_Os04g32650
Os.5857.1.S1_at--194--10531Chr04:19494656..19494680 (25 bp)
TTCATGTCGGTTTTATGTACACAAC
LOC_Os04g32650
Target Sequence 
ATCAGATCCGCGTTGAGGTCGATGAGGTGGCCTCAGTGGTGAAGGAAGTGACGGACGGGCAGAGCACCTGGGCAGACATC
ATGTGGAGGTACCCGGCACATACTGCCTCGGCCGCTGAAGAGGAGGAAGCATCAGAAACCTGAAGGGGGCAAGCAGTGCA
GTGCAAGCCAAAACCTCTGGCTGGAATTGAGATGGTTGTTGCCATCCTGCTTTTCTGATACATGTTTTAACAGAATGCTA
ATGCAGCATTGAGCATTGTTCTGTAATCTCGATGATTTCTCTACATATTTACAGATGATTTTCTCCTGTTTACTGTTNGA
TATTTGGCGTGGTCTACCACATAGTTCCCNNNTACTTGGTTTTGCACATGAATGTTTGTACCGTGTGAATGTGTGATTGA
AGGTCATTCTAGAGTATCAGTCTTTACATTGTCATATTGTTGATTCTCTGCGAAAAATACTAGAGCTATTCATGTCGGTT
TTATGTACACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis