Browse Element(s) Details


OsAffx.26289.1.S1_at

Description tigr:9632.m03112
TID=OsAffx.26289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3260010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os04g32570OsAffx.26564.1.S1_at11/114+19420993..19421784hypothetical protein
LOC_Os04g32580OsAffx.26288.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580Os.20057.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580OsAffx.24671.1.S1_s_at1/114+19423109..19425313expressed protein
LOC_Os04g32590Os.5371.1.S1_s_at11/114+19425396..19428386expressed protein
LOC_Os04g32590OsAffx.14098.1.S1_at11/114+19425396..19428386expressed protein
LOC_Os04g32600OsAffx.26289.1.S1_at10/114+19439893..19442461expressed protein
LOC_Os04g32610OsAffx.27622.1.S1_x_at9/114+19453401..19454741expressed protein
LOC_Os04g32610OsAffx.27622.2.S1_at1/114+19453401..19454741expressed protein
LOC_Os04g32620Os.9523.1.S1_at11/114+19464268..19466627AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26289.1.S1_at--725--9051Chr04:19440200..19440224 (25 bp)
TGCATCGCCGATCTGGCCTACAAGA
LOC_Os04g32600
OsAffx.26289.1.S1_at--649--9851NONE
TACAAGACCGTAGAGCAGCTGGCTA
NONE
OsAffx.26289.1.S1_at--1109--8891Chr04:19441831..19441855 (25 bp)
TGAGTTGTTTGCACAGCATGCTGGT
LOC_Os04g32600
OsAffx.26289.1.S1_at--1062--1531Chr04:19441845..19441869 (25 bp)
AGCATGCTGGTCGTAAATCCATCAA
LOC_Os04g32600
OsAffx.26289.1.S1_at--426--4471Chr04:19442027..19442051 (25 bp)
GCCTCCTGCGGACATTTTCTCAAGA
LOC_Os04g32600
OsAffx.26289.1.S1_at--627--2831Chr04:19442196..19442220 (25 bp)
AAGTAACTCAGGCTACCCACTGATC
LOC_Os04g32600
OsAffx.26289.1.S1_at--1003--1091Chr04:19442270..19442294 (25 bp)
AGTGGAGATCCTTCACACCTGTAAA
LOC_Os04g32600
OsAffx.26289.1.S1_at--876--6071Chr04:19442337..19442361 (25 bp)
GAGTTTGGTTCTTACACGGGATCAT
LOC_Os04g32600
OsAffx.26289.1.S1_at--867--6431Chr04:19442356..19442380 (25 bp)
GATCATGTGCTGTCACACTTTCTGA
LOC_Os04g32600
OsAffx.26289.1.S1_at--282--2051Chr04:19442372..19442396 (25 bp)
ACTTTCTGATAATCCTATGCCTCCT
LOC_Os04g32600
OsAffx.26289.1.S1_at--626--3811Chr04:19442392..19442416 (25 bp)
CTCCTGCTGATGTTTGCTCAACTGA
LOC_Os04g32600
Target Sequence 
TGCATCGCCGATCTGGCCTACAAGACCGTAGAGCAGCTGGCTAAGGATGTTGAGTTGTTTGCACAGCATGCTGGTCGTAA
ATCCATCAAGATGGAAGATGTTATACTCACAGCACATAGAAATGAGCATCTGATGGGCCTCCTGCGGACATTTTCTCAAG
AACTGAAGGGTAAGGAGCCTTCCAGCGAGAGGAAGAGAAAGAAATCTTCGAAGAAGGACGACAACGTGATGCAAATCTGA
TTTAAGTCATGAGATAAATCTTCTTCCCATAGAACAAAGTGGTAGGTTCAAGCAGGAAACTCTGCAAGTAACTCAGGCTA
CCCACTGATCCTGTATTTCACACATTTAGATGTGGTATGACACAATGTTGTCTGTGGAAAGTGGAGATCCTTCACACCTG
TAAATTCACTGAGGCTGTTGTGTCAAGTAGTAAATGGCAAAATTCAGAGTTTGGTTCTTACACGGGATCATGTGCTGTCA
CACTTTCTGATAATCCTATGCCTCCTGCTGATGTTTGCTCAACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis