Browse Element(s) Details


Os.5371.1.S1_s_at

Description gb:AU174699
DB_XREF= gi:13420609
DB_XREF=AU174699
CLONE=F10227
TID=Os.5371.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5371 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3259011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32540Os.49108.2.S1_x_at10/114+19404504..19408114Serine carboxypeptidase family protein, expressed
LOC_Os04g32550Os.4650.1.S1_at10/114+19410796..19413447Defender against cell death 1, putative, expressed
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os04g32570OsAffx.26564.1.S1_at11/114+19420993..19421784hypothetical protein
LOC_Os04g32580OsAffx.26288.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580Os.20057.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580OsAffx.24671.1.S1_s_at1/114+19423109..19425313expressed protein
LOC_Os04g32590Os.5371.1.S1_s_at11/114+19425396..19428386expressed protein
LOC_Os04g32590OsAffx.14098.1.S1_at11/114+19425396..19428386expressed protein
LOC_Os04g32600OsAffx.26289.1.S1_at10/114+19439893..19442461expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5371.1.S1_s_at--286--8011Chr04:19425817..19425841 (25 bp)
GGAGGCGCAGAACATCAACTGCCAA
LOC_Os04g32590
Os.5371.1.S1_s_at--1071--8331Chr04:19425733..19425757 (25 bp)
GGCTGATGCCCTATACAGAATCGCT
LOC_Os04g32590
Os.5371.1.S1_s_at--378--531Chr04:19425714..19425738 (25 bp)
ATCGCTGATAAGATGTAGCCGCCAC
LOC_Os04g32590
Os.5371.1.S1_s_at--910--9991Chr04:19425699..19425723 (25 bp)
TAGCCGCCACTGTAGATGTCTTGAG
LOC_Os04g32590
Os.5371.1.S1_s_at--556--7831Chr04:19425671..19425695 (25 bp)
GGTAAATAATTCATTACTCCCTGAA
LOC_Os04g32590
Os.5371.1.S1_s_at--534--10271Chr04:19425583..19425607 (25 bp)
TTTGCAATTCAGTTTCTCTCTCTTG
LOC_Os04g32590
Os.5371.1.S1_s_at--1095--9511Chr04:19425567..19425591 (25 bp)
TCTCTCTTGCCATTGGTTCTGAAGA
LOC_Os04g32590
Os.5371.1.S1_s_at--528--8051Chr04:19425516..19425540 (25 bp)
GGAGATGTATGAGCCAACAGCATTT
LOC_Os04g32590
Os.5371.1.S1_s_at--1072--4391Chr04:19425504..19425528 (25 bp)
GCCAACAGCATTTAAACGATCTTTT
LOC_Os04g32590
Os.5371.1.S1_s_at--947--4031Chr04:19425488..19425512 (25 bp)
CGATCTTTTTTATCTGTACATACGA
LOC_Os04g32590
Os.5371.1.S1_s_at--1007--7011Chr04:19425473..19425497 (25 bp)
GTACATACGATGACCTAACATTGTG
LOC_Os04g32590
Target Sequence 
GGAGGCGCAGAACATCAACTGCCAACTGGACNGGGAGCAGAGGAAGGACCAAGTGAGCAGCCTNCTTGGTGTGCTTGGCA
AGGNGGCTGATGCCCTATACAGAATCGCTGATAAGATGTAGCCGCCACTGTAGATGTCTTGAGNTCGGTAAATAATTCAT
TACTCCCTGAAAGAAGAAAAAGAAGGAAAATGCATGGGGTTATATTCAGAATGTACAGATTGATNTAGGGTTCTTTTGCA
ATTCAGTTTCTCTCTCTTGCCATTGGTTCTGAAGAAGANAATGAGCTGTTTTTTTCTCTTGGGAGATGTATGAGCCAACA
GCATTTAAACGATCTTTTTTATCTGTACATACGATGACCTAACATTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5371.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis