Browse Element(s) Details


OsAffx.24671.1.S1_s_at

Description tigr:9630.m03986
TID=OsAffx.24671.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cation channel family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4171011/11Cyclic nucleotide-gated ion channel 15, putative, expressed
LOC_Os04g325801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41690OsAffx.31069.1.S1_x_at1/112+25026348..25029190retrotransposon protein, putative, unclassified
LOC_Os02g41696NANA2+25030624..25031739transposon protein, putative, unclassified
LOC_Os02g41702NANA2+25032286..25034493retrotransposon protein, putative, unclassified
LOC_Os02g41710OsAffx.24671.1.S1_s_at11/112+25046302..25049347Cyclic nucleotide-gated ion channel 15, putative, expressed
LOC_Os02g41720Os.31518.2.S1_x_at4/112+25068447..25077351transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g41720Os.56216.1.S1_at3/112+25068447..25077351transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g41720Os.14919.1.S1_at3/112+25068447..25077351transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g41720Os.15476.1.S1_s_at1/112+25068447..25077351transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24671.1.S1_s_at--571--9151Chr02:25049037..25049061 (25 bp)
TGCGACGGCAAAGCGCTCATCAAGA
LOC_Os02g41710
OsAffx.24671.1.S1_s_at--684--791Chr02:25049067..25049091 (25 bp)
ATGGAACCGGATTTCACCGTCGAAG
LOC_Os02g41710
OsAffx.24671.1.S1_s_at--836--6391Chr02:25049115..25049139 (25 bp)
GATCGATCATACTGTGTTTTCTGTT
LOC_Os02g41710
OsAffx.24671.1.S1_s_at--411--10391Chr02:25049131..25049155 (25 bp)
TTTTCTGTTCAGTTAGCTAGTCATG
LOC_Os02g41710
OsAffx.24671.1.S1_s_at--188--10011Chr02:25049144..25049168 (25 bp)
TAGCTAGTCATGTTACGTTCTGATG
LOC_Os02g41710
OsAffx.24671.1.S1_s_at--515--1892Chr04:19424832..19425180 (25 bp)
ACGTTCTGATGTACTTTTGCTTTGA
LOC_Os04g32580
OsAffx.24671.1.S1_s_at--348--5891Chr02:25049200..25049224 (25 bp)
GAGCTGCTTGTATCAACTTGAAGTT
LOC_Os02g41710
OsAffx.24671.1.S1_s_at--1121--7051Chr02:25049234..25049258 (25 bp)
GTAAGTATTTAGACGCTTTTGCTAG
LOC_Os02g41710
OsAffx.24671.1.S1_s_at--804--10391Chr02:25049250..25049274 (25 bp)
TTTTGCTAGATATACATTGGTCCTG
LOC_Os02g41710
OsAffx.24671.1.S1_s_at--625--31Chr02:25049265..25049289 (25 bp)
ATTGGTCCTGTGAATGTTCTAGATA
LOC_Os02g41710
OsAffx.24671.1.S1_s_at--389--10031Chr02:25049296..25049320 (25 bp)
TAGACGCTTTTGCTAGATCGGGAAA
LOC_Os02g41710
Target Sequence 
TGCGACGGCAAAGCGCTCATCAAGAAACCCATGGAACCGGATTTCACCGTCGAAGAAGAGGACTGATCTAATCGAATAGA
TCGATCATACTGTGTTTTCTGTTCAGTTAGCTAGTCATGTTACGTTCTGATGTACTTTTGCTTTGAGTGGTGTGTAATAA
GTTGAGCTGCTTGTATCAACTTGAAGTTGCATTTTGTGTAAGTATTTAGACGCTTTTGCTAGATATACATTGGTCCTGTG
AATGTTCTAGATATACATTTAGACGCTTTTGCTAGATCGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24671.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis