Browse Element(s) Details


Os.20057.1.S1_at

Description gb:AK059476.1
DB_XREF= gi:32969494
TID=Os.20057.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-E10, full insert sequence.
FL= gb:AK059476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3258011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32540Os.49108.2.S1_x_at10/114+19404504..19408114Serine carboxypeptidase family protein, expressed
LOC_Os04g32550Os.4650.1.S1_at10/114+19410796..19413447Defender against cell death 1, putative, expressed
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os04g32570OsAffx.26564.1.S1_at11/114+19420993..19421784hypothetical protein
LOC_Os04g32580OsAffx.26288.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580Os.20057.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580OsAffx.24671.1.S1_s_at1/114+19423109..19425313expressed protein
LOC_Os04g32590Os.5371.1.S1_s_at11/114+19425396..19428386expressed protein
LOC_Os04g32590OsAffx.14098.1.S1_at11/114+19425396..19428386expressed protein
LOC_Os04g32600OsAffx.26289.1.S1_at10/114+19439893..19442461expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20057.1.S1_at--176--9831Chr04:19425057..19425081 (25 bp)
TAAAATTGACGGTACCCTTGTCTCT
LOC_Os04g32580
Os.20057.1.S1_at--365--6991Chr04:19425068..19425092 (25 bp)
GTACCCTTGTCTCTTCAGTTTAATG
LOC_Os04g32580
Os.20057.1.S1_at--65--7171Chr04:19425076..19425100 (25 bp)
GTCTCTTCAGTTTAATGTTGTAATA
LOC_Os04g32580
Os.20057.1.S1_at--322--2191Chr04:19425107..19425131 (25 bp)
ACAAATTTGAGGTTCCAATGTTGGA
LOC_Os04g32580
Os.20057.1.S1_at--893--6671Chr04:19425135..19425159 (25 bp)
GTTGCTATGCAAGTTGAGGAGATAT
LOC_Os04g32580
Os.20057.1.S1_at--40--8051Chr04:19425152..19425176 (25 bp)
GGAGATATGTTGATGTACTTTTGCT
LOC_Os04g32580
Os.20057.1.S1_at--1060--9071Chr04:19425173..19425197 (25 bp)
TGCTTTGATCTTCTGATCTGAGCTA
LOC_Os04g32580
Os.20057.1.S1_at--528--3651Chr04:19425182..19425206 (25 bp)
CTTCTGATCTGAGCTAACCAGTTAT
LOC_Os04g32580
Os.20057.1.S1_at--528--3151Chr04:19425207..19425231 (25 bp)
AATTCTACTGTGGTACTTATTGTTT
LOC_Os04g32580
Os.20057.1.S1_at--847--5911Chr04:19425249..19425273 (25 bp)
GAGCTACTGTGGTCCTGTGGATGTT
LOC_Os04g32580
Os.20057.1.S1_at--1073--8591Chr04:19425258..19425282 (25 bp)
TGGTCCTGTGGATGTTGATGTAAAC
LOC_Os04g32580
Target Sequence 
TAAAATTGACGGTACCCTTGTCTCTTCAGTTTAATGTTGTAATACAATCTACAAATTTGAGGTTCCAATGTTGGAGTAGT
TGCTATGCAAGTTGAGGAGATATGTTGATGTACTTTTGCTTTGATCTTCTGATCTGAGCTAACCAGTTATAATTCTACTG
TGGTACTTATTGTTTAATTAATCTTNTNCNGGGAGCTACTGTGGTCCTGTGGATGTTGATGTAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis